Rw7G022480

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001179
Physical Location & Seq
Reverse (-)
26498774 .. 26503645
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022480.1

Sequence Viewer

Length: 1599 bp
ATGTCGATAATGGCGACATATCTAACTGGAGTCTGGAAGATCAGTATAACACATGCAGCGATTATTGTCAATCTGTATTCGGGAACAGTGGGCATAATGCCAGTGGGCTTGAAACTAATAATGGATGCTTTCGTCGGCAGCTACTGGGTGGTCTTGCTGTCCAGATTTGCCTTCGCCGCTGGTTTGGTCCTTTTGACGATGTCAACACCACCGGTCCTTTCTCATGCAACAGGGACTTGTAGTTCATTCGATGGCGAGTGCATTGGCCAAGTTCAAAGAATTCTCTTTTATACAGGATTGCCTCTAATAGCTGTGGGAGTGTCCGGTCACTTATCCTCGTTAATGGAGTTTGTAGAATCGCAGATACCTCCACCAACATATGAACAGTTGTTTCCATCGCCAGAAGCAGATGGCAATGACCACTTGTTGTGCCAAATACGTTCATGTAAGGATTTCTTCTTTGTGATGCTATCGCTGTTGGTCCCTGGAGTCGCAATTACGACAATTGGTTATGTCCACCCTTGGTCATTTAAGTTTGGGATCCCAGCCACATTTACCGTGGTATCAGTACTTATTTTCATATCTGGTTTATCTTCGTATGAACTTTTCAGGAAATTAGATACAAAAAGCATCACATGGTTGATTCCCTTATGCAGTTTATGCATGAACTTTGTCCTAATAGGTGTTGTGTCTTCGATTGGAAGTACTTTCTTCATCGAACAAGCAACCGATTTGAACCCCTACATTGGAAAGTTATTGATTCCTATTCTTATTCTACCAGCTTTGCAAGAGTTGCCCAAAAAATTATTGGCACAGACAATAGAAGGGTTTGCCAAACTTCCTGCTTTGTCAGTTTTGGTGTCAATAATATTTGCCGTTCTAAGTTGTATAACAGCTGCAAAAGTGGAGACCCGAAGGTTAGGCATGGTTAATAGCCAAGGTGTACTTGACGAGCCTGAGAAAAGAATTCCCATGAGCATGTTTTGGTTGGTTCCACAGTTTGTTCTGCTTGGTTTGGCAGAAGATCTTGCAGAGAAAACCCTTCAAAATGTCTTCGCCGTTCAGGTGGAACCCCGAACCCTTGGTGATGCTGTTCCAGCATCCTTTATTTGTTTAAAAATATTCCTTAAACTAGACATCGATGATGACGAGGAAACCAAAGAGTCCAATCGAAAGATTATGGTACGCTTTGAAGAAACTATGAGATCGAAGCGTGCTTATAAGGAAAGTTTAGCTCAGGCAGTTAAAGGAGTCGGAATCATATGCGGTGTGTTGTCAGTTTATCTAGTGGGTAAGATAAGTGCAAGAGGAGGGAAACCTAGTTGGTTTCAGTACACCATAAACAGGAGCCGTTTGGATAATTACTACTGGACGTTGGCTGCATTAAGTGCTGCTAATCTCTTTTATTTTGTTATGCTGACGATTATATGTCGCGAAGATGATCCGGAGCTACTTCGATACAAACAAGAATGTCAGAAGTATGAAAAACTGATGCAAGGAGTTGAGGAACTTGGAAACCCTGATTCAGTACCGGATGATGTAAAAGCTAAGTGGACTGCTACTTATAATCAGATGGCTGCAGAGCACCCCGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

532

Amino Acids

59.02

Weight (kDa)

5.82

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 48 - 213 6.9e-06 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1221, 1566
AccII CGCG 1 cut(s) 1434
AccIII TCCGGA 1 cut(s) 1444
AciI CCGC 2 cut(s) 177, 1266
AclWI GGATC 3 cut(s) 535, 548, 1436
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 2 cut(s) 279, 966
AfaI GTAC 6 cut(s) 570, 706, 945, 1185, 1334, 1530
AfiI CCNNNNNNNGG 2 cut(s) 746, 1344
AgeI ACCGGT 1 cut(s) 211
AgsI TTSAA 5 cut(s) 112, 275, 736, 1046, 1193
AjnI CCWGG 1 cut(s) 484
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 7 cut(s) 141, 311, 782, 896, 1235, 1450, 1547
AluI AGCT 7 cut(s) 141, 311, 782, 896, 1235, 1450, 1547
Alw21I GWGCWC 1 cut(s) 1587
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 3 cut(s) 535, 548, 1436
AlwNI CAGNNNCTG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 1444
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 6 cut(s) 56, 138, 896, 1379, 1391, 1577
ApoI RAATTY 2 cut(s) 279, 966
AsiGI ACCGGT 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 187, 214, 481
AsuHPI GGTGA 1 cut(s) 1097
AvaII GGWCC 3 cut(s) 187, 214, 481
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BalI TGGCCA 1 cut(s) 267
BamHI GGATCC 1 cut(s) 540
BbsI GAAGAC 2 cut(s) 684, 1045
Bbv12I GWGCWC 1 cut(s) 1587
BbvI GCAGC 6 cut(s) 68, 150, 883, 1366, 1378, 1564
BccI CCATC 4 cut(s) 245, 403, 404, 1567
BceAI ACGGC 3 cut(s) 860, 1043, 1335
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 3 cut(s) 1133, 1286, 1320
BfmI CTRYAG 1 cut(s) 1578
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 7 cut(s) 57, 139, 177, 897, 1380, 1392, 1578
BlsI GCNGC 7 cut(s) 58, 140, 178, 898, 1381, 1393, 1579
BmcAI AGTACT 2 cut(s) 570, 706
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 3 cut(s) 187, 214, 481
BmgT120I GGNCC 3 cut(s) 187, 214, 481
BmiI GGNNCC 5 cut(s) 483, 542, 993, 1071, 1349
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 6 cut(s) 115, 456, 639, 1078, 1109, 1482
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 684, 1045
BpmI CTGGAG 2 cut(s) 48, 507
Bpu10I CCTNAGC 1 cut(s) 1236
Bsa29I ATCGAT 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 5 cut(s) 484, 521, 558, 937, 1081
BsaWI WCCGGW 4 cut(s) 211, 323, 1444, 1531
Bsc4I CCNNNNNNNGG 2 cut(s) 746, 1344
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 4 cut(s) 31, 101, 149, 1373
Bse3DI GCAATG 1 cut(s) 421
BseAI TCCGGA 1 cut(s) 1444
BseBI CCWGG 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 1140
BseDI CCNNGG 5 cut(s) 484, 521, 558, 937, 1081
BseGI GGATG 3 cut(s) 130, 1100, 1540
BseLI CCNNNNNNNGG 2 cut(s) 746, 1344
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 948, 1250
BseNI ACTGG 4 cut(s) 31, 101, 149, 1373
BseRI GAGGAG 1 cut(s) 1323
BseXI GCAGC 6 cut(s) 68, 150, 883, 1366, 1378, 1564
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 1434
BshFI GGCC 1 cut(s) 267
BshTI ACCGGT 1 cut(s) 211
BshVI ATCGAT 1 cut(s) 1140
BsiHKAI GWGCWC 1 cut(s) 1587
BsiSI CCGG 4 cut(s) 212, 324, 1445, 1532
BslFI GGGAC 2 cut(s) 247, 467
BslI CCNNNNNNNGG 2 cut(s) 746, 1344
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 2 cut(s) 247, 467
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 902
Bsp1286I GDGCHC 1 cut(s) 1587
Bsp13I TCCGGA 1 cut(s) 1444
Bsp143I GATC 5 cut(s) 39, 540, 1024, 1205, 1441
Bsp68I TCGCGA 1 cut(s) 1434
BspACI CCGC 2 cut(s) 177, 1266
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 949, 1249
BspDI ATCGAT 1 cut(s) 1140
BspEI TCCGGA 1 cut(s) 1444
BspFNI CGCG 1 cut(s) 1434
BspLI GGNNCC 5 cut(s) 483, 542, 993, 1071, 1349
BspMAI CTGCAG 1 cut(s) 1582
BspPI GGATC 3 cut(s) 535, 548, 1436
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 4 cut(s) 31, 101, 149, 1373
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 5 cut(s) 484, 521, 558, 937, 1081
BssMI GATC 5 cut(s) 39, 540, 1024, 1205, 1441
BssT1I CCWWGG 3 cut(s) 521, 937, 1081
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 4 cut(s) 88, 387, 559, 999
BstAPI GCANNNNNTGC 3 cut(s) 660, 793, 1388
BstC8I GCNNGC 1 cut(s) 1215
BstDEI CTNAG 4 cut(s) 881, 957, 1236, 1548
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 3 cut(s) 130, 1100, 1540
BstFNI CGCG 1 cut(s) 1434
BstKTI GATC 5 cut(s) 42, 543, 1027, 1208, 1444
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 5 cut(s) 39, 540, 1024, 1205, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 176, 660, 793, 1097, 1388
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 2 cut(s) 56, 982
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 1578
BstUI CGCG 1 cut(s) 1434
BstV1I GCAGC 6 cut(s) 68, 150, 883, 1366, 1378, 1564
BstV2I GAAGAC 2 cut(s) 684, 1045
BstX2I RGATCY 2 cut(s) 540, 1024
BstYI RGATCY 2 cut(s) 540, 1024
Bsu15I ATCGAT 1 cut(s) 1140
BsuRI GGCC 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 1140
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 3 cut(s) 130, 1100, 1540
BtsIMutI CAGTG 2 cut(s) 93, 108
BtuMI TCGCGA 1 cut(s) 1434
Cac8I GCNNGC 1 cut(s) 1215
CaiI CAGNNNCTG 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 187, 214, 481
ClaI ATCGAT 1 cut(s) 1140
Csp6I GTAC 6 cut(s) 569, 705, 944, 1184, 1333, 1529
CspAI ACCGGT 1 cut(s) 211
CviAII CATG 8 cut(s) 53, 224, 444, 636, 664, 925, 973, 979
CviQI GTAC 6 cut(s) 569, 705, 944, 1184, 1333, 1529
DdeI CTNAG 4 cut(s) 881, 957, 1236, 1548
DpnI GATC 5 cut(s) 41, 542, 1026, 1207, 1443
DpnII GATC 5 cut(s) 39, 540, 1024, 1205, 1441
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 521, 937, 1081
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 3 cut(s) 187, 214, 481
EcoRI GAATTC 2 cut(s) 279, 966
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 3 cut(s) 521, 937, 1081
EcoT22I ATGCAT 1 cut(s) 665
ErhI CCWWGG 3 cut(s) 521, 937, 1081
FaeI CATG 8 cut(s) 56, 227, 447, 639, 667, 928, 976, 982
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 930, 962
FaqI GGGAC 2 cut(s) 247, 467
FatI CATG 8 cut(s) 52, 223, 443, 635, 663, 924, 972, 978
FauNDI CATATG 2 cut(s) 379, 1262
Fnu4HI GCNGC 7 cut(s) 57, 139, 177, 897, 1380, 1392, 1578
FokI GGATG 3 cut(s) 137, 1087, 1547
Fsp4HI GCNGC 7 cut(s) 57, 139, 177, 897, 1380, 1392, 1578
FspBI CTAG 3 cut(s) 1133, 1286, 1320
GluI GCNGC 7 cut(s) 57, 139, 177, 897, 1380, 1392, 1578
GsaI CCCAGC 1 cut(s) 548
GsuI CTGGAG 2 cut(s) 48, 507
HaeIII GGCC 1 cut(s) 267
HapII CCGG 4 cut(s) 212, 324, 1445, 1532
Hin1II CATG 8 cut(s) 56, 227, 447, 639, 667, 928, 976, 982
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 9 cut(s) 30, 356, 489, 643, 760, 1163, 1251, 1257, 1523
HpaII CCGG 4 cut(s) 212, 324, 1445, 1532
HphI GGTGA 1 cut(s) 1097
Hpy166II GTNNAC 5 cut(s) 204, 517, 944, 1335, 1554
Hpy188I TCNGA 3 cut(s) 1256, 1476, 1572
Hpy188III TCNNGA 6 cut(s) 34, 81, 162, 610, 1433, 1445
Hpy8I GTNNAC 5 cut(s) 204, 517, 944, 1335, 1554
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 181, 818, 909, 1052
HpyCH4III ACNGT 4 cut(s) 88, 387, 559, 999
HpyCH4IV ACGT 2 cut(s) 439, 1373
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 660, 793, 1097, 1388
HpyF3I CTNAG 4 cut(s) 881, 957, 1236, 1548
HpySE526I ACGT 2 cut(s) 439, 1373
Hsp92II CATG 8 cut(s) 56, 227, 447, 639, 667, 928, 976, 982
Kpn2I TCCGGA 1 cut(s) 1444
Kzo9I GATC 5 cut(s) 39, 540, 1024, 1205, 1441
LmnI GCTCC 2 cut(s) 1347, 1447
Lsp1109I GCAGC 6 cut(s) 68, 150, 883, 1366, 1378, 1564
LweI GCATC 6 cut(s) 115, 456, 639, 1078, 1109, 1482
MaeI CTAG 3 cut(s) 1133, 1286, 1320
MaeII ACGT 2 cut(s) 439, 1373
MaeIII GTNAC 1 cut(s) 326
MalI GATC 5 cut(s) 41, 542, 1026, 1207, 1443
MboI GATC 5 cut(s) 39, 540, 1024, 1205, 1441
MboII GAAGA 9 cut(s) 49, 448, 585, 684, 703, 1034, 1045, 1205, 1448
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 2 cut(s) 540, 1024
MhlI GDGCHC 1 cut(s) 1587
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 7 cut(s) 279, 495, 504, 614, 803, 966, 1360
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 4 cut(s) 39, 498, 1172, 1260
MmeI TCCRAC 1 cut(s) 1234
MnlI CCTC 7 cut(s) 312, 346, 378, 1144, 1301, 1304, 1498
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 665
MroI TCCGGA 1 cut(s) 1444
MscI TGGCCA 1 cut(s) 267
MseI TTAA 7 cut(s) 341, 531, 930, 1115, 1128, 1245, 1385
MslI CAYNNNNRTG 1 cut(s) 977
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 179, 896
MspI CCGG 4 cut(s) 212, 324, 1445, 1532
MspR9I CCNGG 1 cut(s) 486
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 1434
MwoI GCNNNNNNNGC 5 cut(s) 176, 660, 793, 1097, 1388
NdeI CATATG 2 cut(s) 379, 1262
NdeII GATC 5 cut(s) 39, 540, 1024, 1205, 1441
NlaIII CATG 8 cut(s) 56, 227, 447, 639, 667, 928, 976, 982
NlaIV GGNNCC 5 cut(s) 483, 542, 993, 1071, 1349
NmuCI GTSAC 1 cut(s) 326
NruI TCGCGA 1 cut(s) 1434
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 2 cut(s) 56, 982
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 1146
PfeI GAWTC 5 cut(s) 356, 643, 760, 1257, 1523
PflFI GACNNNGTC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 211
PkrI GCNGC 7 cut(s) 58, 140, 178, 898, 1381, 1393, 1579
PleI GAGTC 4 cut(s) 38, 497, 1171, 1259
PpsI GAGTC 4 cut(s) 38, 497, 1171, 1259
PsiI TTATAA 2 cut(s) 1221, 1566
Psp6I CCWGG 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 5 cut(s) 483, 542, 993, 1071, 1349
PspPI GGNCC 3 cut(s) 187, 214, 481
PstI CTGCAG 1 cut(s) 1582
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 2 cut(s) 540, 1024
PsyI GACNNNGTC 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 896
RruI TCGCGA 1 cut(s) 1434
RsaI GTAC 6 cut(s) 570, 706, 945, 1185, 1334, 1530
RsaNI GTAC 6 cut(s) 569, 705, 944, 1184, 1333, 1529
RseI CAYNNNNRTG 1 cut(s) 977
SaqAI TTAA 7 cut(s) 341, 531, 930, 1115, 1128, 1245, 1385
SatI GCNGC 7 cut(s) 57, 139, 177, 897, 1380, 1392, 1578
Sau3AI GATC 5 cut(s) 39, 540, 1024, 1205, 1441
Sau96I GGNCC 3 cut(s) 187, 214, 481
ScaI AGTACT 2 cut(s) 570, 706
SchI GAGTC 4 cut(s) 39, 498, 1172, 1260
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 1587
SfaNI GCATC 6 cut(s) 115, 456, 639, 1078, 1109, 1482
SfcI CTRYAG 1 cut(s) 1578
SinI GGWCC 3 cut(s) 187, 214, 481
SmiMI CAYNNNNRTG 1 cut(s) 977
Sse9I AATT 7 cut(s) 279, 495, 504, 614, 803, 966, 1360
SsiI CCGC 2 cut(s) 177, 1266
SspI AATATT 2 cut(s) 870, 1122
SspMI CTAG 3 cut(s) 1133, 1286, 1320
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 3 cut(s) 521, 937, 1081
TaaI ACNGT 4 cut(s) 88, 387, 559, 999
TaiI ACGT 2 cut(s) 442, 1376
TaqI TCGA 8 cut(s) 5, 249, 695, 717, 1140, 1171, 1208, 1456
TasI AATT 7 cut(s) 279, 495, 504, 614, 803, 966, 1360
TatI WGTACW 4 cut(s) 568, 704, 943, 1332
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 5 cut(s) 356, 643, 760, 1257, 1523
Tru1I TTAA 7 cut(s) 341, 531, 930, 1115, 1128, 1245, 1385
Tru9I TTAA 7 cut(s) 341, 531, 930, 1115, 1128, 1245, 1385
TscAI CASTG 2 cut(s) 93, 108
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 6 cut(s) 56, 138, 896, 1379, 1391, 1577
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 8 cut(s) 234, 396, 432, 568, 615, 680, 703, 1497
TspRI CASTG 2 cut(s) 93, 108
Tth111I GACNNNGTC 1 cut(s) 199
VpaK11BI GGWCC 3 cut(s) 187, 214, 481
XapI RAATTY 2 cut(s) 279, 966
XceI RCATGY 2 cut(s) 56, 982
XcmI CCANNNNNNNNNTGG 2 cut(s) 556, 805
XspI CTAG 3 cut(s) 1133, 1286, 1320
ZrmI AGTACT 2 cut(s) 570, 706
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.