Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

10687200 .. 10687610

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAATCATTATGTCGGAAGCTTGCGGGTTCCAATAATTATCCTTCCAATATTCCAACATTCTTACAAGAAGGAAAGACCACTAAATTGTGGTCTTCATCCAAAATTGGGGATTGCATTCTCGATGATATTTGCAATTCTAAGTTGTATCACAGCCGCAAAAGTTGAGATCCGGAGACTAGGCTTGGTTACAAGCCAGGGTGTGACTGACGAACCCAAGGAAATCATTCCCATGACCATGTTTTGGTTGCTTCCACGGTTTCTTCTCCTCGGGTTGTCTGAAGCGATTTCAGATCAGAAGAACATTACTGATTTCTTCACTAATGAGTTGGCCCTCGAACCCAATGACGACGAGACAACAAAAGAATCAAAACGCAAGTACGTGGAGTACGTTCTTAGCTCAGGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

6.83

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	25, 156
AclWI	GGATC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	380, 389
AfiI	CCNNNNNNNGG	2 cut(s)	107, 243
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	21, 399
AluI	AGCT	2 cut(s)	21, 399
Alw26I	GTCTC	2 cut(s)	169, 347
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	169, 347
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	4 cut(s)	196, 216, 254, 268
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 243
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	196, 216, 254, 268
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	107, 243
BseRI	GAGGAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	107, 243
BsmAI	GTCTC	2 cut(s)	169, 347
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	168, 292
BspACI	CCGC	2 cut(s)	25, 156
BspANI	GGCC	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	196, 216, 254, 268
BssMI	GATC	2 cut(s)	168, 292
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	140, 395, 400, 408
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	171, 295
BstMAI	GTCTC	2 cut(s)	169, 347
BstMBI	GATC	2 cut(s)	168, 292
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	379, 388
CviAII	CATG	2 cut(s)	232, 238
CviJI	RGCY	7 cut(s)	21, 155, 183, 195, 332, 399, 405
CviKI_1	RGCY	7 cut(s)	21, 155, 183, 195, 332, 399, 405
CviQI	GTAC	2 cut(s)	379, 388
DdeI	CTNAG	4 cut(s)	140, 395, 400, 408
DpnI	GATC	2 cut(s)	170, 294
DpnII	GATC	2 cut(s)	168, 292
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	235, 241
FaiI	YATR	3 cut(s)	12, 233, 239
FatI	CATG	2 cut(s)	231, 237
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	2 cut(s)	235, 241
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	4, 365
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	4 cut(s)	17, 280, 292, 297
Hpy188III	TCNNGA	2 cut(s)	121, 172
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	53, 64
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	2 cut(s)	381, 390
HpyCH4V	TGCA	2 cut(s)	116, 134
HpyF3I	CTNAG	4 cut(s)	140, 395, 400, 408
HpySE526I	ACGT	2 cut(s)	381, 390
Hsp92II	CATG	2 cut(s)	235, 241
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	168, 292
LpnPI	CCDG	4 cut(s)	182, 185, 209, 387
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	2 cut(s)	381, 390
MaeIII	GTNAC	2 cut(s)	187, 202
MalI	GATC	2 cut(s)	170, 294
MboI	GATC	2 cut(s)	168, 292
MboII	GAAGA	4 cut(s)	86, 254, 307, 310
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	4 cut(s)	36, 85, 104, 135
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	278, 344
MroI	TCCGGA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	230, 236
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	168, 292
NlaIII	CATG	2 cut(s)	235, 241
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	4, 365
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	2 cut(s)	380, 389
RsaNI	GTAC	2 cut(s)	379, 388
RseI	CAYNNNNRTG	2 cut(s)	230, 236
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	168, 292
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	23, 384, 393, 401
SmiMI	CAYNNNNRTG	2 cut(s)	230, 236
Sse9I	AATT	4 cut(s)	36, 85, 104, 135
SsiI	CCGC	2 cut(s)	25, 156
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	2 cut(s)	384, 393
TaqI	TCGA	2 cut(s)	122, 336
TasI	AATT	4 cut(s)	36, 85, 104, 135
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	4, 365
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	17, 86
Van91I	CCANNNNNTGG	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.