Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

19399274 .. 19400010

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTTGCTATGGGGGCTTTGCGGTGGGAGTCGAAGAGGTTGTCGCCAGAGTGGGAATCGTCGTCGTCGCCATAAAAGAAGTCGTCGTCGAGGGTTCAAACGCGGGTGAGGTGGAGGAAGGGGCGGTGGCGGCGAGATCGGGAGGCGGCGAGGTCGAGGCGGGAGAGGAGGGACTTGAGGGAGGGGTTGCAGTCGATGAAGGCGGTGAGGAGGTGGGTGCCATTTTTTACGATGGTGCGGAAGGAGAAGATGAGGAGGGAGAGGAAGAGGAAGGTGAGGAGGTTGGAGGCGAAGGAGGAAGAGACTGGCCGGAGGAGCTGCGGCATCGATTTGAGGTGGTGGAGACGCAGGTGGTGGTGGTGGTGGTGGCGGAGGAGATTTTTCGGGATAGTCCCGATACCGTCCCGTCCTGTTTCAACATTACCATAACGGGATGGGGTAGGACGGGATTGTCATTTTCAAAACCTATCCCATCCCGTCCCGCTAACTTTCGGTACGAGACCGGTACGGGATCAGGATTCCGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

18.52

Weight (kDa)

4.09

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
AasI	GACNNNNNNGTC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	104
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	308
AfaI	GTAC	3 cut(s)	497, 508, 527
AgeI	ACCGGT	1 cut(s)	503
AgsI	TTSAA	3 cut(s)	99, 418, 462
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	3 cut(s)	297, 338, 494
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AsiGI	ACCGGT	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	119, 218, 287
BanI	GGYRCC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	227, 429, 481
BcoDI	GTCTC	3 cut(s)	297, 338, 494
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	132, 148, 320, 323
BlsI	GCNGC	4 cut(s)	133, 149, 321, 324
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	494
BsaWI	WCCGGW	2 cut(s)	503, 522
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	311
BseCI	ATCGAT	1 cut(s)	328
BseGI	GGATG	2 cut(s)	440, 473
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	6 cut(s)	182, 224, 269, 293, 329, 389
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	218
BshTI	ACCGGT	1 cut(s)	503
BshVI	ATCGAT	1 cut(s)	328
BsiSI	CCGG	3 cut(s)	311, 504, 523
BslFI	GGGAC	4 cut(s)	186, 378, 389, 465
BsmAI	GTCTC	3 cut(s)	297, 338, 494
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	4 cut(s)	186, 378, 389, 465
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	137, 512
BspANI	GGCC	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	503
BssMI	GATC	2 cut(s)	137, 512
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	3 cut(s)	30, 261, 295
BstF5I	GGATG	2 cut(s)	440, 473
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	140, 515
BstMAI	GTCTC	3 cut(s)	297, 338, 494
BstMBI	GATC	2 cut(s)	137, 512
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 131, 316
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	310
BsuTUI	ATCGAT	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	440, 473
BveI	ACCTGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	328
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	496, 507, 526
CspAI	ACCGGT	1 cut(s)	503
CviJI	RGCY	3 cut(s)	18, 310, 319
CviKI_1	RGCY	3 cut(s)	18, 310, 319
CviQI	GTAC	3 cut(s)	496, 507, 526
DpnI	GATC	2 cut(s)	139, 514
DpnII	GATC	2 cut(s)	137, 512
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	3 cut(s)	30, 261, 295
EarI	CTCTTC	3 cut(s)	30, 261, 295
EciI	GGCGGA	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	338
FaiI	YATR	3 cut(s)	12, 74, 428
FaqI	GGGAC	4 cut(s)	186, 378, 389, 465
FauI	CCCGC	3 cut(s)	97, 154, 490
Fnu4HI	GCNGC	4 cut(s)	132, 148, 320, 323
FokI	GGATG	2 cut(s)	447, 460
Fsp4HI	GCNGC	4 cut(s)	132, 148, 320, 323
GluI	GCNGC	4 cut(s)	132, 148, 320, 323
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	3 cut(s)	311, 504, 523
HgaI	GACGC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	30, 57, 519
HpaII	CCGG	3 cut(s)	311, 504, 523
HphI	GGTGA	3 cut(s)	119, 218, 287
Hpy188III	TCNNGA	4 cut(s)	141, 386, 395, 516
Hpy99I	CGWCG	5 cut(s)	65, 68, 71, 89, 92
HpyAV	CCTTC	5 cut(s)	113, 194, 236, 266, 287
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 131, 316
Kzo9I	GATC	2 cut(s)	137, 512
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	61, 292, 324, 335, 424, 501, 517
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	334
MalI	GATC	2 cut(s)	139, 514
MboI	GATC	2 cut(s)	137, 512
MboII	GAAGA	4 cut(s)	47, 260, 278, 312
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	265
MspI	CCGG	3 cut(s)	311, 504, 523
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	15, 131, 316
NdeII	GATC	2 cut(s)	137, 512
NlaIV	GGNNCC	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	57, 519
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	133, 149, 321, 324
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	3 cut(s)	497, 508, 527
RsaNI	GTAC	3 cut(s)	496, 507, 526
SatI	GCNGC	4 cut(s)	132, 148, 320, 323
Sau3AI	GATC	2 cut(s)	137, 512
SchI	GAGTC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	5 cut(s)	33, 90, 156, 195, 328
TauI	GCSGC	3 cut(s)	134, 150, 325
TfiI	GAWTC	2 cut(s)	57, 519
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.