RLG00000002938

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001179
Physical Location & Seq
Forward (+)
42038760 .. 42041454
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002938

Sequence Viewer

Length: 873 bp
ATGTCAATAATATTTGCCGTTCTAAGTTGTATAACAGCTGCAAAAGTGGAGACCCGAAGGTTAGGCATGGTTAATAGCCAAGGTGTACTAGACGAGCCTGAGAAAAGAATTCCCATGAGCATGTTTTGGTTGGTTCCACAGTTTTTTCTGCTTGGTTTGGCAGAAGATCTTGCAGAGAAAACCCTTCAAAATGTCTTCGTAATTCAGGTGGAACCCCGAACCCTTGGTGATGCTGTTCCAGCATTCTTTATTGGTTTAAAAATATTCCTTAAACTAGACATCGATGATGACGAGGAAACCAAAGAGTCCAATCGAAAGATTATGATAAGTGCAAGAGGAGGGAAACCTAGTTGGTTTCAGTACACCATAAACAGAAGCCGTTTGGATAATTACTACTGGACGTTGGCTGCCTTGAGTGCTGCTAATCTCTTTTATTTTGTTATCCTGACGCTTATATATCCCCAAGATCCGGAACTACTTCATTACCAACAAGAATGTGGGGAGCATGAAGAACTGATGCAAGGACTTGAGGAACTTGGAAACCCTGATTCAGTACCGGATGATGTAAAAGCTAAGTGGACTGCTACTTATAATCAGATGGCTACAGAGCACCCCGATTGGTTATCAAAAGACCAAAAGCAGAAGAATATTGCAGCATGCACATCGAAGTCTAAACAATCCTTGTATTTACAAAGAGGATGGGTTGGGTTGGCGGCGGCGGCGGCGGTGGAGGGTGATAGGAGAAGTGGAGTTTGGCAGGGATCGGGAGTTGGGGTTGGCGGCGAGGTCGAGACAGGAGATGAGGGACTTGAGGGAGGGGTCGCGGTCGATGAAGGCGGGGAGAAGGAGAGGAGAGGATATCGGTGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

291

Amino Acids

32.4

Weight (kDa)

4.87

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccII CGCG 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 8 cut(s) 713, 716, 719, 722, 725, 780, 824, 837
AclWI GGATC 2 cut(s) 461, 769
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 3 cut(s) 87, 362, 555
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 736, 768
AluBI AGCT 2 cut(s) 38, 572
AluI AGCT 2 cut(s) 38, 572
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 2 cut(s) 44, 785
AlwI GGATC 2 cut(s) 461, 769
Aor13HI TCCGGA 1 cut(s) 469
ApeKI GCWGC 4 cut(s) 38, 407, 419, 653
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 239, 746
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 4 cut(s) 25, 394, 406, 665
BccI CCATC 2 cut(s) 592, 693
BceAI ACGGC 2 cut(s) 2, 363
BcgI CGANNNNNNTGC 2 cut(s) 645, 679
BcoDI GTCTC 2 cut(s) 44, 785
BfaI CTAG 3 cut(s) 89, 275, 348
BfmI CTRYAG 1 cut(s) 603
BglII AGATCT 1 cut(s) 166
BisI GCNGC 9 cut(s) 39, 408, 420, 654, 714, 717, 720, 723, 781
BlsI GCNGC 9 cut(s) 40, 409, 421, 655, 715, 718, 721, 724, 782
BmiI GGNNCC 2 cut(s) 135, 213
BmsI GCATC 2 cut(s) 220, 507
BpiI GAAGAC 1 cut(s) 187
BpuEI CTTGAG 3 cut(s) 433, 548, 830
Bsa29I ATCGAT 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 79, 223
BsaWI WCCGGW 2 cut(s) 469, 556
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 401
BseAI TCCGGA 1 cut(s) 469
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 79, 223
BseGI GGATG 2 cut(s) 565, 704
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 351, 865
BseXI GCAGC 4 cut(s) 25, 394, 406, 665
Bsh1236I CGCG 1 cut(s) 824
Bsh1285I CGRYCG 1 cut(s) 828
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 828
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 470, 557
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 44, 785
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 612
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 166, 466, 761
BspACI CCGC 8 cut(s) 713, 716, 719, 722, 725, 780, 824, 837
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 1 cut(s) 824
BspLI GGNNCC 2 cut(s) 135, 213
BspPI GGATC 2 cut(s) 461, 769
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 79, 223
BssMI GATC 3 cut(s) 166, 466, 761
BssT1I CCWWGG 2 cut(s) 79, 223
Bst4CI ACNGT 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 3 cut(s) 23, 99, 573
BstF5I GGATG 2 cut(s) 565, 704
BstFNI CGCG 1 cut(s) 824
BstKTI GATC 3 cut(s) 169, 469, 764
BstMAI GTCTC 2 cut(s) 44, 785
BstMBI GATC 3 cut(s) 166, 466, 761
BstMCI CGRYCG 1 cut(s) 828
BstMWI GCNNNNNNNGC 4 cut(s) 239, 416, 719, 722
BstNSI RCATGY 2 cut(s) 124, 660
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 4 cut(s) 25, 394, 406, 665
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 166, 466
BstYI RGATCY 2 cut(s) 166, 466
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 2 cut(s) 565, 704
Cac8I GCNNGC 1 cut(s) 658
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 457
Csp6I GTAC 3 cut(s) 86, 361, 554
CviAII CATG 5 cut(s) 67, 115, 121, 506, 657
CviJI RGCY 7 cut(s) 38, 78, 97, 378, 407, 572, 602
CviKI_1 RGCY 7 cut(s) 38, 78, 97, 378, 407, 572, 602
CviQI GTAC 3 cut(s) 86, 361, 554
DdeI CTNAG 3 cut(s) 23, 99, 573
DpnI GATC 3 cut(s) 168, 468, 763
DpnII GATC 3 cut(s) 166, 466, 761
DraI TTTAAA 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 79, 223
Eco31I GGTCTC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 108
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 2 cut(s) 79, 223
ErhI CCWWGG 2 cut(s) 79, 223
FaeI CATG 5 cut(s) 70, 118, 124, 509, 660
FaqI GGGAC 1 cut(s) 819
FatI CATG 5 cut(s) 66, 114, 120, 505, 656
FauI CCCGC 1 cut(s) 830
Fnu4HI GCNGC 9 cut(s) 39, 408, 420, 654, 714, 717, 720, 723, 781
FokI GGATG 2 cut(s) 572, 711
Fsp4HI GCNGC 9 cut(s) 39, 408, 420, 654, 714, 717, 720, 723, 781
FspBI CTAG 3 cut(s) 89, 275, 348
GluI GCNGC 9 cut(s) 39, 408, 420, 654, 714, 717, 720, 723, 781
HapII CCGG 2 cut(s) 470, 557
HgaI GACGC 1 cut(s) 457
Hin1II CATG 5 cut(s) 70, 118, 124, 509, 660
HinfI GANTC 2 cut(s) 305, 548
HpaII CCGG 2 cut(s) 470, 557
HphI GGTGA 2 cut(s) 239, 746
Hpy166II GTNNAC 3 cut(s) 86, 363, 579
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 4 cut(s) 445, 470, 765, 790
Hpy8I GTNNAC 3 cut(s) 86, 363, 579
HpyAV CCTTC 4 cut(s) 51, 194, 827, 838
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 6 cut(s) 41, 173, 332, 520, 653, 660
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 416, 719, 722
HpyF3I CTNAG 3 cut(s) 23, 99, 573
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 5 cut(s) 70, 118, 124, 509, 660
Kpn2I TCCGGA 1 cut(s) 469
Kzo9I GATC 3 cut(s) 166, 466, 761
LmnI GCTCC 1 cut(s) 502
Lsp1109I GCAGC 4 cut(s) 25, 394, 406, 665
LweI GCATC 2 cut(s) 220, 507
MaeI CTAG 3 cut(s) 89, 275, 348
MaeII ACGT 1 cut(s) 401
MalI GATC 3 cut(s) 168, 468, 763
MboI GATC 3 cut(s) 166, 466, 761
MboII GAAGA 4 cut(s) 176, 187, 521, 655
MflI RGATCY 2 cut(s) 166, 466
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 3 cut(s) 108, 201, 388
MlyI GAGTC 1 cut(s) 314
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 72, 257, 270
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 470, 557
Mva1269I GAATGC 1 cut(s) 242
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 4 cut(s) 239, 416, 719, 722
NdeII GATC 3 cut(s) 166, 466, 761
NlaIII CATG 5 cut(s) 70, 118, 124, 509, 660
NlaIV GGNNCC 2 cut(s) 135, 213
NspI RCATGY 2 cut(s) 124, 660
PaeI GCATGC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 9 cut(s) 40, 409, 421, 655, 715, 718, 721, 724, 782
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PsiI TTATAA 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 135, 213
PsuI RGATCY 2 cut(s) 166, 466
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 87, 362, 555
RsaNI GTAC 3 cut(s) 86, 361, 554
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 3 cut(s) 72, 257, 270
SatI GCNGC 9 cut(s) 39, 408, 420, 654, 714, 717, 720, 723, 781
Sau3AI GATC 3 cut(s) 166, 466, 761
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 612
SetI ASST 8 cut(s) 40, 62, 85, 210, 349, 404, 574, 789
SfaNI GCATC 2 cut(s) 220, 507
SfcI CTRYAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 3 cut(s) 412, 527, 809
SmoI CTYRAG 3 cut(s) 412, 527, 809
SphI GCATGC 1 cut(s) 660
Sse9I AATT 3 cut(s) 108, 201, 388
SsiI CCGC 8 cut(s) 713, 716, 719, 722, 725, 780, 824, 837
SspI AATATT 3 cut(s) 12, 264, 649
SspMI CTAG 3 cut(s) 89, 275, 348
StyI CCWWGG 2 cut(s) 79, 223
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 404
TaqI TCGA 5 cut(s) 282, 313, 665, 789, 828
TasI AATT 3 cut(s) 108, 201, 388
TatI WGTACW 2 cut(s) 85, 360
TauI GCSGC 5 cut(s) 716, 719, 722, 725, 783
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 72, 257, 270
Tru9I TTAA 3 cut(s) 72, 257, 270
TseI GCWGC 4 cut(s) 38, 407, 419, 653
TspDTI ATGAA 3 cut(s) 470, 522, 846
XapI RAATTY 1 cut(s) 108
XceI RCATGY 2 cut(s) 124, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 3 cut(s) 89, 275, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.