Rh3DG128900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001179
Physical Location & Seq
Forward (+)
11019906 .. 11020369
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG128900.1

Sequence Viewer

Length: 312 bp
ATGAATCATTATGTCGGAAGCTTGCGGGTTCCAATAATTATCCTTCCAATATTCCAACATTCTTACAAGAAGGAAAGACCACTAAATTGTGGTCGTCATCCAAAATTGGGGATTGCATTCTCGATGATATTTGCAATTCTAAGTTGTATCACAGCCGCAAAAGTTGAGACCCGGAGACTAGGCTTGGTTACAAGCCAGGGTGTGATTGACGAACCCAAGGAAATCATTCCCATGACCATGTTTTGGTTGCTTCCACGGTTTCTTCTCCTCGGGTTGTCTGAAGCGATTTCAGATCAGAAGAACATCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

9.56

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 2 cut(s) 25, 156
AcuI CTGAAG 1 cut(s) 300
AfiI CCNNNNNNNGG 2 cut(s) 107, 243
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 161, 169
Ama87I CYCGRG 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 269
BarI GAAGNNNNNNTAC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 161, 169
BfaI CTAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 172, 197
BmeT110I CYCGRG 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 172, 197
BpuMI CCSGG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 4 cut(s) 196, 216, 254, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 243
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 196, 216, 254, 268
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 107, 243
BseRI GAGGAG 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 107, 243
BsmAI GTCTC 2 cut(s) 161, 169
BsmI GAATGC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 269
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 2 cut(s) 25, 156
BspLI GGNNCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 4 cut(s) 196, 216, 254, 268
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 161, 169
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 170, 195
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 23
CviAII CATG 2 cut(s) 232, 238
CviJI RGCY 4 cut(s) 21, 155, 183, 195
CviKI_1 RGCY 4 cut(s) 21, 155, 183, 195
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 235, 241
FaiI YATR 3 cut(s) 12, 233, 239
FatI CATG 2 cut(s) 231, 237
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 156
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 235, 241
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 17, 280, 292, 297
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 53, 64
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 116, 134
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 235, 241
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 182, 185, 209
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 254, 310
MluCI AATT 4 cut(s) 36, 85, 104, 135
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 230, 236
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 172, 197
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 1 cut(s) 197
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 235, 241
NlaIV GGNNCC 1 cut(s) 30
PctI GAATGC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 230, 236
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 292
ScrFI CCNGG 2 cut(s) 172, 197
SetI ASST 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 230, 236
Sse9I AATT 4 cut(s) 36, 85, 104, 135
SsiI CCGC 2 cut(s) 25, 156
SspI AATATT 1 cut(s) 51
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 170, 195
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 122
TasI AATT 4 cut(s) 36, 85, 104, 135
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.