Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

24308816 .. 24309433

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1161900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAGGGGTTTGATCTTTTGACAATGTCAACACCACCAGTCCTTGCTGTATTAACAGGGAGTTGCAGCTCATTTGTGCCCCAGTGCATTGGCCCAGTCCATAAAATTCTCTTTTACACAGCATTGCTTCTATTAGCTATTGGAGAGTCGACTCACTTGTCCTCCTGGCCTCAGTTCGGCGAGGACCAGTTCAAAACAGAAGAGGTTTTCATGTCCAAGACAGAAAAGGTTTACAAACGTTCATGTCAGCTTTTCTCATTGGCGACACTACTGTTGGTCGTCCCTGTTTGTGCTGTTATAGCAGTTGGTTTATTGAAGTCTTGGTTGATTAAGTTTGGGATAGGAGCAATATCTACAGTGGTATCTACACTTATCTTCTCAAGCGGTTTATATTCATATAAACGCCCCAGTGGAGAGTCTAGCCATCTTAATGGAGTTTTTACTATCATACTGGGCAGCGGTATTCCAGCAGTTATGTTTTTCATAGTCTCATGTATGGCCGTTGTCCCATCAGGTGTTATTGCTTCTATTGGAAATACTTTCTTCATGGAACAAGCAACCGACATGAACCATTACATTGGGAGGCCCAGAGTTCCTACTATTATCCTTCCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

206

Amino Acids

22.12

Weight (kDa)

8.29

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	21 - 151	3e-06	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	2 cut(s)	384, 459
AclI	AACGTT	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	193, 316
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	69, 137, 250
AluI	AGCT	3 cut(s)	69, 137, 250
Alw26I	GTCTC	1 cut(s)	493
AoxI	GGCC	4 cut(s)	91, 167, 498, 584
ApeKI	GCWGC	2 cut(s)	66, 456
ApoI	RAATTY	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	92, 184, 585
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BbvI	GCAGC	2 cut(s)	78, 468
BccI	CCATC	2 cut(s)	432, 517
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	67, 457
BlsI	GCNGC	2 cut(s)	68, 458
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	92, 184, 585
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	4 cut(s)	76, 89, 402, 461
BmuI	ACTGGG	4 cut(s)	76, 89, 402, 461
BpuEI	CTTGAG	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	6 cut(s)	38, 82, 95, 187, 408, 456
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	6 cut(s)	38, 82, 95, 187, 408, 456
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	78, 468
BshFI	GGCC	4 cut(s)	93, 169, 500, 586
BslFI	GGGAC	2 cut(s)	266, 491
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	266, 491
BsnI	GGCC	4 cut(s)	93, 169, 500, 586
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	384, 459
BspANI	GGCC	4 cut(s)	93, 169, 500, 586
BspCNI	CTCAG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	6 cut(s)	38, 82, 95, 187, 408, 456
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	273, 358
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	78, 468
BstXI	CCANNNNNNTGG	3 cut(s)	89, 431, 578
BsuRI	GGCC	4 cut(s)	93, 169, 500, 586
BtsIMutI	CAGTG	3 cut(s)	89, 363, 415
Cfr13I	GGNCC	3 cut(s)	92, 184, 585
CviAII	CATG	5 cut(s)	211, 243, 492, 547, 565
CviJI	RGCY	8 cut(s)	69, 93, 137, 169, 250, 423, 500, 586
CviKI_1	RGCY	8 cut(s)	69, 93, 137, 169, 250, 423, 500, 586
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	5 cut(s)	214, 246, 495, 550, 568
FaqI	GGGAC	2 cut(s)	266, 491
FatI	CATG	5 cut(s)	210, 242, 491, 546, 564
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	67, 457
Fsp4HI	GCNGC	2 cut(s)	67, 457
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	2 cut(s)	67, 457
HaeIII	GGCC	4 cut(s)	93, 169, 500, 586
Hin1II	CATG	5 cut(s)	214, 246, 495, 550, 568
HincII	GTYRAC	2 cut(s)	30, 150
HindII	GTYRAC	2 cut(s)	30, 150
HinfI	GANTC	3 cut(s)	146, 151, 416
Hpy166II	GTNNAC	3 cut(s)	30, 150, 232
Hpy8I	GTNNAC	3 cut(s)	30, 150, 232
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	273, 358
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	4, 66, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	214, 246, 495, 550, 568
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	2 cut(s)	78, 468
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	238
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	212, 367, 535
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	3 cut(s)	145, 155, 425
MnlI	CCTC	5 cut(s)	172, 175, 180, 196, 576
MseI	TTAA	3 cut(s)	53, 330, 429
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	5 cut(s)	214, 246, 495, 550, 568
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	68, 458
PleI	GAGTC	3 cut(s)	145, 154, 424
PpsI	GAGTC	3 cut(s)	145, 154, 424
Psp1406I	AACGTT	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	92, 184, 585
PsyI	GACNNNGTC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	429
SalI	GTCGAC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	53, 330, 429
SatI	GCNGC	2 cut(s)	67, 457
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	3 cut(s)	92, 184, 585
SchI	GAGTC	3 cut(s)	145, 155, 425
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	71, 139, 207, 231, 241, 252, 517
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	384, 459
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	273, 358
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	53, 330, 429
Tru9I	TTAA	3 cut(s)	53, 330, 429
TscAI	CASTG	3 cut(s)	89, 363, 415
TseI	GCWGC	2 cut(s)	66, 456
TspDTI	ATGAA	6 cut(s)	199, 231, 384, 472, 535, 581
TspRI	CASTG	3 cut(s)	89, 363, 415
Tth111I	GACNNNGTC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.