Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

23849134 .. 23854111

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGTCCTATATGCCTCTTCCTTATCCTAATCGCTGTTGTATCAGCTCTCGGAAATACTTACTTCACTGAACAAGCAAGCAAGATGAATCACAAGGTTGGACCCTTGAAGGTTTCTATTCTTTTCCTTACGATGCCCCGAAATATGGTTAGACGATGGTTTAGCACATCAAAATGGTGTGCTAAAAACATAGCTCCCAGAATTGGGATTTCAGTGTCGATGGCATTAGCAGTTCTATGTTGTAGCATATCTGCAATAATCGAGAAGCGAAGGTTAGGTGTGGTTGAGAGCCACGGTTTACTTGACAAGCCCGACGAAACAATTCCCATGACCATGTTTTGGTTGCTTCCGCAGTATCTTCTCCTTGGAGGTGTTTGTGGTCTTTCAAAGAATAGCACTGTTCATTTTTTCACTGATGTGGTCCTTCGCTGGCCCAAAATAGAAAAAGATGAAGGTGTGAAGGCAAAGGAAGAATCCAAACCTACAGAAAAGGACAATGAGGGTTCAAGCGTACACATAATTAAGTCGCCGTTGGACCAGGCAAATGAAGAATTCAAGCGTACAGAAAAAGATGGTGAGGTTCCTAATCAGGCACAAGACCAGTCCAAGAGTACAGAAAACGATGGCAATAAGGAGAAAGAAGAATCCAAGCGTCAATACATTCATTTCTTTGTTGATGCTGTTTCTGGAGTAGGAATTATATTCAGTGTGTTGTTAGTCTATATGGTGGGTCAGATCGAACCGTCTTGGTTCCAAGACACACTAAATAGGAGTCATTTGGATTACTATTACTGGACCTTGGCTGCGTTGAGTGGAGCTAATCTGCTATTGTTTCTTCTGGTAATCTACCTGTTGGGGCCAGAGAAACAACATGTGGATGATACAATTGAGGGTACTGATGAGGAACCAGTAATTGACAAGGATGAGTTGCAAGATCTGGAAGCAAATTATATGGATACTGCCGAGGAACTCGACGAGGAGGAACATATGGATTGGGCCTTAATGTCGCACGCAGCTCGAGTTCGTGATGAGACCGGCTCGTCTTTGACTCGTGTAAACTCGAACGCTCGTAAAAGAACCAAGTCAAGCTTGAGTGTGAACATGCTTGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

371

Amino Acids

41.81

Weight (kDa)

5.26

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1039
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	4 cut(s)	513, 562, 613, 895
AfiI	CCNNNNNNNGG	4 cut(s)	145, 203, 204, 339
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	4 cut(s)	109, 387, 507, 556
AjnI	CCWGG	1 cut(s)	537
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	5 cut(s)	47, 194, 818, 1016, 1089
AluI	AGCT	5 cut(s)	47, 194, 818, 1016, 1089
Alw26I	GTCTC	1 cut(s)	1025
Ama87I	CYCGRG	1 cut(s)	1017
AoxI	GGCC	3 cut(s)	431, 857, 996
ApeKI	GCWGC	2 cut(s)	803, 1013
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	7 cut(s)	101, 421, 432, 535, 795, 857, 996
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	1017
AvaII	GGWCC	4 cut(s)	101, 421, 535, 795
BauI	CACGAG	1 cut(s)	1050
BbvI	GCAGC	2 cut(s)	790, 1025
BccI	CCATC	4 cut(s)	150, 214, 566, 617
BceAI	ACGGC	1 cut(s)	514
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	949
BcoDI	GTCTC	1 cut(s)	1025
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	949
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	2 cut(s)	804, 1014
BlsI	GCNGC	2 cut(s)	805, 1015
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	4 cut(s)	101, 421, 535, 795
BmeT110I	CYCGRG	1 cut(s)	1017
BmgT120I	GGNCC	7 cut(s)	101, 421, 432, 535, 795, 857, 996
BmiI	GGNNCC	5 cut(s)	103, 582, 752, 858, 906
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	123, 667
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
BpmI	CTGGAG	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	1111
BsaI	GGTCTC	1 cut(s)	1025
BsaJI	CCNNGG	4 cut(s)	292, 364, 798, 963
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 203, 204, 339
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	3 cut(s)	601, 797, 908
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	4 cut(s)	292, 364, 798, 963
BseGI	GGATG	2 cut(s)	883, 928
BseLI	CCNNNNNNNGG	4 cut(s)	145, 203, 204, 339
BseNI	ACTGG	3 cut(s)	601, 797, 908
BseRI	GAGGAG	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	790, 1025
BshFI	GGCC	3 cut(s)	433, 859, 998
BsiHKCI	CYCGRG	1 cut(s)	1017
BsiSI	CCGG	1 cut(s)	1035
BslI	CCNNNNNNNGG	4 cut(s)	145, 203, 204, 339
BsmAI	GTCTC	1 cut(s)	1025
BsnI	GGCC	3 cut(s)	433, 859, 998
Bso31I	GGTCTC	1 cut(s)	1025
BsoBI	CYCGRG	1 cut(s)	1017
Bsp143I	GATC	2 cut(s)	735, 934
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	3 cut(s)	433, 859, 998
BspHI	TCATGA	1 cut(s)	1112
BspLI	GGNNCC	5 cut(s)	103, 582, 752, 858, 906
BspTNI	GGTCTC	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	3 cut(s)	601, 797, 908
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	4 cut(s)	292, 364, 798, 963
BssMI	GATC	2 cut(s)	735, 934
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	364, 798
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	296, 400, 744
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	79, 431, 1011
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	883, 928
BstKTI	GATC	2 cut(s)	738, 937
BstMAI	GTCTC	1 cut(s)	1025
BstMBI	GATC	2 cut(s)	735, 934
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	875, 1105
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	790, 1025
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	3 cut(s)	433, 859, 998
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	883, 928
BtsIMutI	CAGTG	5 cut(s)	66, 219, 396, 411, 712
Cac8I	GCNNGC	3 cut(s)	79, 431, 1011
CciI	TCATGA	1 cut(s)	1112
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	7 cut(s)	101, 421, 432, 535, 795, 857, 996
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	4 cut(s)	512, 561, 612, 894
CviAII	CATG	5 cut(s)	328, 334, 872, 1102, 1113
CviQI	GTAC	4 cut(s)	512, 561, 612, 894
DpnI	GATC	2 cut(s)	737, 936
DpnII	GATC	2 cut(s)	735, 934
DrdI	GACNNNNNNGTC	1 cut(s)	1039
DseDI	GACNNNNNNGTC	1 cut(s)	1039
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	364, 798
Eco31I	GGTCTC	1 cut(s)	1025
Eco47I	GGWCC	4 cut(s)	101, 421, 535, 795
Eco88I	CYCGRG	1 cut(s)	1017
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	364, 798
ErhI	CCWWGG	2 cut(s)	364, 798
FaeI	CATG	5 cut(s)	331, 337, 875, 1105, 1116
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FatI	CATG	5 cut(s)	327, 333, 871, 1101, 1112
FauNDI	CATATG	1 cut(s)	987
Fnu4HI	GCNGC	2 cut(s)	804, 1014
FokI	GGATG	2 cut(s)	890, 935
Fsp4HI	GCNGC	2 cut(s)	804, 1014
GluI	GCNGC	2 cut(s)	804, 1014
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	433, 859, 998
HapII	CCGG	1 cut(s)	1035
HgaI	GACGC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	331, 337, 875, 1105, 1116
HindIII	AAGCTT	1 cut(s)	1087
HinfI	GANTC	6 cut(s)	4, 88, 473, 644, 772, 1048
HpaII	CCGG	1 cut(s)	1035
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	4 cut(s)	299, 514, 1057, 1099
Hpy188I	TCNGA	2 cut(s)	53, 735
Hpy188III	TCNNGA	5 cut(s)	262, 687, 938, 1025, 1113
Hpy8I	GTNNAC	4 cut(s)	299, 514, 1057, 1099
Hpy99I	CGWCG	2 cut(s)	317, 977
HpyAV	CCTTC	5 cut(s)	103, 264, 434, 446, 454
HpyCH4III	ACNGT	3 cut(s)	296, 400, 744
HpyCH4V	TGCA	2 cut(s)	254, 931
Hsp92II	CATG	5 cut(s)	331, 337, 875, 1105, 1116
Kzo9I	GATC	2 cut(s)	735, 934
LmnI	GCTCC	2 cut(s)	199, 815
Lsp1109I	GCAGC	2 cut(s)	790, 1025
LweI	GCATC	2 cut(s)	123, 667
MalI	GATC	2 cut(s)	737, 936
MboI	GATC	2 cut(s)	735, 934
MboII	GAAGA	6 cut(s)	10, 350, 482, 560, 653, 827
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	1 cut(s)	934
MluCI	AATT	8 cut(s)	201, 321, 519, 551, 696, 885, 912, 946
MlyI	GAGTC	3 cut(s)	13, 781, 1042
MmeI	TCCRAC	2 cut(s)	79, 513
MnlI	CCTC	9 cut(s)	26, 362, 493, 571, 883, 895, 958, 970, 973
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	522, 1001
MslI	CAYNNNNRTG	4 cut(s)	172, 332, 416, 876
MspI	CCGG	1 cut(s)	1035
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	885
MvaI	CCWGG	1 cut(s)	539
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	2 cut(s)	735, 934
NlaIII	CATG	5 cut(s)	331, 337, 875, 1105, 1116
NlaIV	GGNNCC	5 cut(s)	103, 582, 752, 858, 906
NmeAIII	GCCGAG	1 cut(s)	988
NspI	RCATGY	2 cut(s)	875, 1105
OliI	CACNNNNGTG	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	1017
PagI	TCATGA	1 cut(s)	1112
PciI	ACATGT	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	88, 473, 644
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	805, 1015
PleI	GAGTC	3 cut(s)	12, 780, 1042
PpsI	GAGTC	3 cut(s)	12, 780, 1042
PscI	ACATGT	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	5 cut(s)	103, 582, 752, 858, 906
PspPI	GGNCC	7 cut(s)	101, 421, 432, 535, 795, 857, 996
PspXI	VCTCGAGB	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	934
RsaI	GTAC	4 cut(s)	513, 562, 613, 895
RsaNI	GTAC	4 cut(s)	512, 561, 612, 894
RseI	CAYNNNNRTG	4 cut(s)	172, 332, 416, 876
SaqAI	TTAA	2 cut(s)	522, 1001
SatI	GCNGC	2 cut(s)	804, 1014
Sau3AI	GATC	2 cut(s)	735, 934
Sau96I	GGNCC	7 cut(s)	101, 421, 432, 535, 795, 857, 996
SchI	GAGTC	3 cut(s)	13, 781, 1042
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	123, 667
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	1017
SinI	GGWCC	4 cut(s)	101, 421, 535, 795
SlaI	CTCGAG	1 cut(s)	1017
SmiMI	CAYNNNNRTG	4 cut(s)	172, 332, 416, 876
SmlI	CTYRAG	2 cut(s)	1017, 1090
SmoI	CTYRAG	2 cut(s)	1017, 1090
Sse9I	AATT	8 cut(s)	201, 321, 519, 551, 696, 885, 912, 946
SsiI	CCGC	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	364, 798
TaaI	ACNGT	3 cut(s)	296, 400, 744
TaqI	TCGA	6 cut(s)	218, 261, 738, 972, 1018, 1061
TasI	AATT	8 cut(s)	201, 321, 519, 551, 696, 885, 912, 946
TatI	WGTACW	1 cut(s)	611
TfiI	GAWTC	3 cut(s)	88, 473, 644
Tru1I	TTAA	2 cut(s)	522, 1001
Tru9I	TTAA	2 cut(s)	522, 1001
TscAI	CASTG	5 cut(s)	73, 219, 403, 418, 712
TseI	GCWGC	2 cut(s)	803, 1013
TspDTI	ATGAA	5 cut(s)	101, 392, 465, 561, 653
TspRI	CASTG	5 cut(s)	73, 219, 403, 418, 712
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	4 cut(s)	101, 421, 535, 795
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	2 cut(s)	875, 1105
XhoI	CTCGAG	1 cut(s)	1017
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.