Rorug05G0338700

POT family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
41149120 .. 41150066
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0338700.1

Sequence Viewer

Length: 570 bp
ATGTATGACAATATAGAAGACTTTCTGCAGAGTAACAATAATCTCATGCCAGTAAGGTACTCTTACTCAGAAATCAAAAAGATGGCTAGCGGATTCAAGGACAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAACTCCGCAGTGGTCGCCTAGTGGCCATCAAGATTTTGAGTAAATCCAAAACAAATGGGCAAGATTTTATCAATGAGGTTGCTACTATCGGAAGGATTCACCATGTTAACGTGGTGCGATTTATAGGCTTCTGTGTTGACCGTTCAAACCGTGCACTTGTTTATGATTTCATGTCAAATGGCTCTCTTGACAAGTACATTTTTTCTCAGCAAGGTGCTATCTCCTTAAGCTGTGAGAAAATATTTGAGATTGCAGTTGGAGTGGCTCGTGGAATCCAATATCTCCATCAAGGATGTGACATGCGAATTTTGTATTCTGACCTCAAGCCTCACAACATTCTTCTTGACGAGAATTTTACTGCCAAGGTTTCTGATTTTAGATTAGCAAGGCTATACCCATGCCATTGGATAACAGCATTGTGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.45

Weight (kDa)

9.07

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 32 - 178 4.2e-31 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 179 6.8e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 2 cut(s) 90, 148
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 2 cut(s) 447, 493
AfaI GTAC 3 cut(s) 59, 134, 338
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 97, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Alw21I GWGCWC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 294
AoxI GGCC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 294
ApoI RAATTY 2 cut(s) 447, 493
Asp700I GAANNNNTTC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 122, 233
AsuNHI GCTAGC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 3 cut(s) 76, 176, 435
BfaI CTAG 2 cut(s) 87, 161
BfmI CTRYAG 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 81, 362
BseNI ACTGG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 298
BsnI GGCC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 132
BspACI CCGC 2 cut(s) 90, 148
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 80, 361
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 367
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 504
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 130, 284, 293
BstAFI CTTAAG 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 67, 348
BstF5I GGATG 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 546
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 88
Csp6I GTAC 3 cut(s) 58, 133, 337
CviAII CATG 5 cut(s) 46, 245, 313, 442, 540
CviJI RGCY 9 cut(s) 86, 120, 167, 270, 324, 372, 407, 469, 532
CviKI_1 RGCY 9 cut(s) 86, 120, 167, 270, 324, 372, 407, 469, 532
CviQI GTAC 3 cut(s) 58, 133, 337
DdeI CTNAG 2 cut(s) 67, 348
EaeI YGGCCR 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 5 cut(s) 49, 248, 316, 445, 543
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 5 cut(s) 45, 244, 312, 441, 539
FokI GGATG 1 cut(s) 447
FspBI CTAG 2 cut(s) 87, 161
HaeIII GGCC 1 cut(s) 167
Hin1II CATG 5 cut(s) 49, 248, 316, 445, 543
HincII GTYRAC 2 cut(s) 250, 280
HindII GTYRAC 2 cut(s) 250, 280
HinfI GANTC 3 cut(s) 93, 238, 414
HpaI GTTAAC 1 cut(s) 250
HphI GGTGA 2 cut(s) 122, 233
Hpy166II GTNNAC 4 cut(s) 133, 250, 280, 296
Hpy188I TCNGA 4 cut(s) 70, 233, 460, 514
Hpy188III TCNNGA 3 cut(s) 172, 329, 485
Hpy8I GTNNAC 4 cut(s) 133, 250, 280, 296
HpyAV CCTTC 2 cut(s) 107, 228
HpyCH4III ACNGT 3 cut(s) 130, 284, 293
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 28, 296, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 67, 348
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 5 cut(s) 49, 248, 316, 445, 543
KspAI GTTAAC 1 cut(s) 250
LpnPI CCDG 1 cut(s) 63
MaeI CTAG 2 cut(s) 87, 161
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 32, 437
MboII GAAGA 2 cut(s) 29, 473
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 104, 447, 493
MluNI TGGCCA 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 4 cut(s) 110, 211, 473, 480
Mox20I TGGCCA 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 249, 368
Msp20I TGGCCA 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 156
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 5 cut(s) 49, 248, 316, 445, 543
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 93, 238, 414
PspN4I GGNNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 30
RsaI GTAC 3 cut(s) 59, 134, 338
RsaNI GTAC 3 cut(s) 58, 133, 337
SaqAI TTAA 2 cut(s) 249, 368
SduI GDGCHC 1 cut(s) 298
SetI ASST 7 cut(s) 59, 222, 255, 358, 374, 465, 510
SfcI CTRYAG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 367, 464
SmoI CTYRAG 2 cut(s) 367, 464
Sse9I AATT 3 cut(s) 104, 447, 493
SsiI CCGC 2 cut(s) 90, 148
SspI AATATT 1 cut(s) 384
SspMI CTAG 2 cut(s) 87, 161
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 3 cut(s) 130, 284, 293
TaiI ACGT 1 cut(s) 255
TasI AATT 3 cut(s) 104, 447, 493
TatI WGTACW 2 cut(s) 132, 336
TfiI GAWTC 3 cut(s) 93, 238, 414
Tru1I TTAA 2 cut(s) 249, 368
Tru9I TTAA 2 cut(s) 249, 368
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 367
VneI GTGCAC 1 cut(s) 294
XapI RAATTY 2 cut(s) 447, 493
XceI RCATGY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 2 cut(s) 87, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.