RchiOBHm_Chr5g0061221

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001179
Physical Location & Seq
Reverse (-)
66600551 .. 66600739
189 bp
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UTR
Exon/CDS
Intron
PRQ33761

Sequence Viewer

Length: 189 bp
ATGAGCACAATGATTACATACTTGACTAGTGTATGGAAGTTAAATCTCACAGGTGCTGCCGCTGTCGTCAATGTGTATGCCGGCGCAGTGGCCGTAATGCCACTGGGCATGCTTTTTGTTGTTGATACTGTAATCGGTAACTATTGGTTGATCATACTCTCCAGTTGTGCTTACACCATGGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

62

Amino Acids

6.64

Weight (kDa)

5.58

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 90
AhlI ACTAGT 1 cut(s) 26
AleI CACNNNNGTG 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 77
BclI TGATCA 1 cut(s) 150
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BmrI ACTGGG 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 108, 162
BseDI CCNNGG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 108, 162
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 108, 162
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 82, 110
BstDSI CCRYGG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 101
Cac8I GCNNGC 2 cut(s) 82, 110
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 2 cut(s) 109, 178
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 112, 181
FaiI YATR 6 cut(s) 19, 34, 78, 110, 155, 179
FatI CATG 2 cut(s) 108, 177
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 57, 60
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 85
GluI GCNGC 2 cut(s) 57, 60
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 112, 181
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HpaII CCGG 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 130
Hsp92II CATG 2 cut(s) 112, 181
HspAI GCGC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 36, 89, 94, 175
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 2 cut(s) 41, 187
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 82
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 112, 181
NspI RCATGY 1 cut(s) 112
OliI CACNNNNGTG 1 cut(s) 179
PaeI GCATGC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 58, 61
PstNI CAGNNNCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 41, 187
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 1 cut(s) 150
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 55
SgeI CNNG 7 cut(s) 34, 39, 63, 93, 116, 121, 174
SmiMI CAYNNNNRTG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 26
SphI GCATGC 1 cut(s) 112
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 130
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 41, 187
Tru9I TTAA 2 cut(s) 41, 187
TscAI CASTG 2 cut(s) 93, 108
TseI GCWGC 1 cut(s) 56
TspRI CASTG 2 cut(s) 93, 108
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.