RLG00000002937

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001179
Physical Location & Seq
Forward (+)
42001710 .. 42002289
580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002937

Sequence Viewer

Length: 435 bp
ATGTCAACACCACCGGTCCTTTCTCTTGCAACAGGGACTCGTAGTTCATACGATGGCGAGTGCATTGGCCAAGTTCAAAGAATTCTCTTTTACCCAGGATTGCCTCTAATAGCTGTGGGAGTGTCCGGTCACTTATCCTCGTTAATGGAGTTTGTAGAATCGCAGATACCTCCACCAACATATGAACAGTTATTTCCATCTCATTCTAATGATTCCAAGCCAGAAGCAGATGGCAATGACCACTTGTTGTGCCAAATACGTTCGTGTAAGGGTTTCTTCTTTGTGATGCTGTCGCTGTTGGTCCCTGGAGTTGCAATTACGACAATTGGTTATGTCCACCCTTGGTCATTTAAGTTTGGGATCCCAGCCACATTTACCGTGGTGTTGTGTCTTCGATTGGAAGTACTTTCTTCATCGAACAAGCAACCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

145

Amino Acids

15.69

Weight (kDa)

6.02

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 355, 368
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 2 cut(s) 94, 304
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 2 cut(s) 355, 368
AoxI GGCC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 16, 301
AvaII GGWCC 2 cut(s) 16, 301
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 383
BccI CCATC 3 cut(s) 47, 205, 224
BciT130I CCWGG 2 cut(s) 96, 306
BmcAI AGTACT 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 96, 306
Bme18I GGWCC 2 cut(s) 16, 301
BmgT120I GGNCC 2 cut(s) 16, 301
BmiI GGNNCC 2 cut(s) 303, 362
BmrFI CCNGG 2 cut(s) 96, 306
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 327
BsaJI CCNNGG 4 cut(s) 94, 304, 341, 378
BsaWI WCCGGW 2 cut(s) 13, 125
Bse118I RCCGGY 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 96, 306
BseDI CCNNGG 4 cut(s) 94, 304, 341, 378
BseMI GCAATG 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 126
BslFI GGGAC 2 cut(s) 49, 287
BsmFI GGGAC 2 cut(s) 49, 287
BsnI GGCC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 360
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 303, 362
BspPI GGATC 2 cut(s) 355, 368
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 94, 304, 341, 378
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 96, 306
Bst4CI ACNGT 2 cut(s) 189, 379
BstDSI CCRYGG 1 cut(s) 378
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstNI CCWGG 2 cut(s) 96, 306
BstSCI CCNGG 2 cut(s) 94, 304
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 16, 301
Csp6I GTAC 1 cut(s) 404
CspAI ACCGGT 1 cut(s) 13
CviJI RGCY 4 cut(s) 69, 113, 220, 368
CviKI_1 RGCY 4 cut(s) 69, 113, 220, 368
CviQI GTAC 1 cut(s) 404
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 341
Eco47I GGWCC 2 cut(s) 16, 301
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 94, 304
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
FaiI YATR 4 cut(s) 49, 181, 183, 333
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 2 cut(s) 49, 287
FauNDI CATATG 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 14, 126
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 37, 158, 212
HpaII CCGG 2 cut(s) 14, 126
Hpy166II GTNNAC 2 cut(s) 6, 337
Hpy8I GTNNAC 2 cut(s) 6, 337
HpyCH4III ACNGT 2 cut(s) 189, 379
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 29, 63, 314
HpySE526I ACGT 1 cut(s) 259
Kzo9I GATC 1 cut(s) 360
LpnPI CCDG 9 cut(s) 18, 27, 81, 108, 139, 234, 291, 318, 378
LweI GCATC 1 cut(s) 276
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 3 cut(s) 268, 383, 402
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 3 cut(s) 81, 315, 324
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 3 cut(s) 114, 148, 180
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 2 cut(s) 143, 351
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 2 cut(s) 14, 126
MspR9I CCNGG 2 cut(s) 96, 306
MunI CAATTG 1 cut(s) 324
MvaI CCWGG 2 cut(s) 96, 306
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 360
NlaIV GGNNCC 2 cut(s) 303, 362
NmuCI GTSAC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 158, 212
PinAI ACCGGT 1 cut(s) 13
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 94, 304
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 94, 304
PspN4I GGNNCC 2 cut(s) 303, 362
PspPI GGNCC 2 cut(s) 16, 301
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 143, 351
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 2 cut(s) 16, 301
ScaI AGTACT 1 cut(s) 405
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 96, 306
SetI ASST 3 cut(s) 115, 172, 262
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 2 cut(s) 16, 301
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 3 cut(s) 81, 315, 324
StyD4I CCNGG 2 cut(s) 94, 304
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 189, 379
TaiI ACGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 394, 416
TasI AATT 3 cut(s) 81, 315, 324
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 2 cut(s) 158, 212
Tru1I TTAA 2 cut(s) 143, 351
Tru9I TTAA 2 cut(s) 143, 351
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 36, 198, 402
VpaK11BI GGWCC 2 cut(s) 16, 301
XapI RAATTY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.