Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8428917.1

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Reverse (-)

183 .. 986

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8428917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgaatcacagggttggatccttaaaggtttctgttcttttccttatagtgccccgaagtttgatgagaaaatggtttagccaatcaaaatattgtgctaataagattattactccgagaattgggatttcattgtcgatggcattggcgattctatgttgtatcacagctgcattagtggaaaacagaaggttgggcgtggttaagagacatggtttacttaacaagcccgatgagacagttcccatgaccatgttctggttgcttccacagtttcttctcgttggaggcgtttctgggctttccgagaagtgcattgctcttttctacactgatgtggtgcttcactggccgaaaatagaaaatgatgtcgatatacaagcaaaggacaaacccaattccaaagaacaaaacattaagtcccccatggaacaggcaaacgaaacactcaagcctacagaaaagaatgatgaggaccccaatcaggcaaaacaagaaacaaagagtacggaaaaagatggtgaggggcacattgatcccgaaagggcagaacaaaaatccaagcgtcaatacatagagttttttgttgatgctcttgagggaatgggaaatataggcagtgtggtgttggtctatgtagtgggtgaaataaaacctacttggttccaagaaacggtaaaccgaagtcatttggataattattactggactttggctgcattgactgcagctaatttgatattgtttattccagtaatattcttcctgttgaggtcaaagaaattcactgcattgtttgcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

267

Amino Acids

30.29

Weight (kDa)

8.77

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	258
AclWI	GGATC	3 cut(s)	12, 25, 530
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	782
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	4 cut(s)	122, 258, 484, 673
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	170, 731
AluI	AGCT	2 cut(s)	170, 731
Alw26I	GTCTC	2 cut(s)	202, 230
AlwI	GGATC	3 cut(s)	12, 25, 530
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	170, 716, 728
ApoI	RAATTY	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	533, 656
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	2 cut(s)	54, 531
BamHI	GGATCC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	157, 703, 740
BccI	CCATC	2 cut(s)	133, 512
BcoDI	GTCTC	2 cut(s)	202, 230
BfmI	CTRYAG	2 cut(s)	456, 726
BisI	GCNGC	3 cut(s)	171, 717, 729
BlsI	GCNGC	3 cut(s)	172, 718, 730
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	19, 477, 665
BmsI	GCATC	1 cut(s)	580
BpuEI	CTTGAG	2 cut(s)	434, 617
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 258, 484, 673
Bse1I	ACTGG	3 cut(s)	353, 710, 752
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	4 cut(s)	122, 258, 484, 673
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	353, 710, 752
BseSI	GKGCMC	2 cut(s)	54, 531
BseXI	GCAGC	3 cut(s)	157, 703, 740
BshFI	GGCC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	4 cut(s)	122, 258, 484, 673
BsmAI	GTCTC	2 cut(s)	202, 230
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	54, 531
Bsp143I	GATC	2 cut(s)	17, 535
Bsp19I	CCATGG	1 cut(s)	426
BspANI	GGCC	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	19, 477, 665
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	3 cut(s)	12, 25, 530
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	353, 710, 752
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	17, 535
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	241, 273, 676
BstAPI	GCANNNNNTGC	2 cut(s)	725, 797
BstDSI	CCRYGG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	20, 538
BstMAI	GTCTC	2 cut(s)	202, 230
BstMBI	GATC	2 cut(s)	17, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 725, 797
BstSFI	CTRYAG	2 cut(s)	456, 726
BstSLI	GKGCMC	2 cut(s)	54, 531
BstV1I	GCAGC	3 cut(s)	157, 703, 740
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	426
BtsI	GCAGTG	2 cut(s)	625, 786
BtsIMutI	CAGTG	4 cut(s)	330, 346, 625, 786
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	4 cut(s)	212, 247, 253, 427
CviJI	RGCY	8 cut(s)	81, 170, 229, 301, 352, 454, 716, 731
CviKI_1	RGCY	8 cut(s)	81, 170, 229, 301, 352, 454, 716, 731
CviQI	GTAC	1 cut(s)	507
DpnI	GATC	2 cut(s)	19, 537
DpnII	GATC	2 cut(s)	17, 535
EaeI	YGGCCR	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	215, 250, 256, 430
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	211, 246, 252, 426
Fnu4HI	GCNGC	3 cut(s)	171, 717, 729
Fsp4HI	GCNGC	3 cut(s)	171, 717, 729
GluI	GCNGC	3 cut(s)	171, 717, 729
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	215, 250, 256, 430
HinfI	GANTC	2 cut(s)	4, 151
HphI	GGTGA	2 cut(s)	533, 656
Hpy166II	GTNNAC	2 cut(s)	218, 679
Hpy188I	TCNGA	2 cut(s)	117, 307
Hpy188III	TCNNGA	2 cut(s)	539, 596
Hpy8I	GTNNAC	2 cut(s)	218, 679
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	3 cut(s)	241, 273, 676
HpyCH4V	TGCA	5 cut(s)	173, 315, 719, 728, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 725, 797
Hsp92II	CATG	4 cut(s)	215, 250, 256, 430
Kzo9I	GATC	2 cut(s)	17, 535
LpnPI	CCDG	8 cut(s)	244, 282, 334, 419, 470, 691, 765, 779
Lsp1109I	GCAGC	3 cut(s)	157, 703, 740
LweI	GCATC	1 cut(s)	580
MalI	GATC	2 cut(s)	19, 537
MboI	GATC	2 cut(s)	17, 535
MboII	GAAGA	2 cut(s)	269, 754
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	54, 531
MluCI	AATT	5 cut(s)	120, 397, 697, 733, 782
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	281, 466, 517, 592, 765
MseI	TTAA	4 cut(s)	23, 204, 222, 417
MslI	CAYNNNNRTG	2 cut(s)	251, 335
MspA1I	CMGCKG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	349, 725, 797
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	2 cut(s)	17, 535
NlaIII	CATG	4 cut(s)	215, 250, 256, 430
NlaIV	GGNNCC	3 cut(s)	19, 477, 665
OliI	CACNNNNGTG	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	4, 151
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	172, 718, 730
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	19, 477, 665
PspPI	GGNCC	1 cut(s)	475
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	2 cut(s)	251, 335
SaqAI	TTAA	4 cut(s)	23, 204, 222, 417
SatI	GCNGC	3 cut(s)	171, 717, 729
Sau3AI	GATC	2 cut(s)	17, 535
Sau96I	GGNCC	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	54, 531
SetI	ASST	6 cut(s)	30, 172, 194, 658, 733, 776
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	2 cut(s)	456, 726
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	251, 335
SmlI	CTYRAG	2 cut(s)	449, 596
SmoI	CTYRAG	2 cut(s)	449, 596
Sse9I	AATT	5 cut(s)	120, 397, 697, 733, 782
SspI	AATATT	2 cut(s)	92, 759
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	241, 273, 676
TaqI	TCGA	2 cut(s)	137, 372
TasI	AATT	5 cut(s)	120, 397, 697, 733, 782
TfiI	GAWTC	2 cut(s)	4, 151
Tru1I	TTAA	4 cut(s)	23, 204, 222, 417
Tru9I	TTAA	4 cut(s)	23, 204, 222, 417
TscAI	CASTG	4 cut(s)	337, 353, 625, 793
TseI	GCWGC	3 cut(s)	170, 716, 728
TspDTI	ATGAA	2 cut(s)	17, 120
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	4 cut(s)	337, 353, 625, 793
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.