Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

9282210 .. 9283112

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14971.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACAGCGGCAATTTCGTGTTGCACTATAGCTGCATCTGTGGAGCGTCTTAGGTTATCTGTGGTCAAGAGCCACGGTTTGGTTAACGAGGCCAACAGAGGAATTCTGATGAGTAGAGCTTGGTTGATTCCGCAGTTTATTCTCCTTGGAGCCCTTAACGGGACTAAAGAGTTAGCCTTCCGCCTCTTGCTCCTTAATCAAGTACCTCAACCCGGTAATCGGTACAGGGCTTCGGCTCATGGTGTTTTTGGAGCGGGGATTATAAGCAATGTCTTGTCTGTTTATGTAGTGGGTAAAATAAAACCCAGTTGGTTCCAAGAAACCCTAAACAGGAGTCGTTTGGACAATTACTACTGGACCTTGGCTGCTTTGACTGCAGCTAGTCTGCTTATCTATGTTCCATTGAGCCTTCCACATCGGTCTTCACAGCATGAACCGGAAAGTGAACATCGGCCGAACGACAGCCACTCTGATAGTGAAGTCGACGCAGAAATGGACATCGCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

170

Amino Acids

18.62

Weight (kDa)

7.86

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	4 cut(s)	8, 131, 181, 254
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	2 cut(s)	204, 224
AfiI	CCNNNNNNNGG	5 cut(s)	79, 159, 212, 219, 330
AluBI	AGCT	3 cut(s)	32, 119, 380
AluI	AGCT	3 cut(s)	32, 119, 380
AoxI	GGCC	2 cut(s)	90, 452
ApeKI	GCWGC	3 cut(s)	32, 365, 377
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	19, 352, 389
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	27, 375
BisI	GCNGC	4 cut(s)	9, 33, 366, 378
BlsI	GCNGC	4 cut(s)	10, 34, 367, 379
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	2 cut(s)	151, 314
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	73, 145, 360
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 159, 212, 219, 330
Bse1I	ACTGG	2 cut(s)	306, 359
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	73, 145, 360
BseLI	CCNNNNNNNGG	5 cut(s)	79, 159, 212, 219, 330
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	306, 359
BseX3I	CGGCCG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	19, 352, 389
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	92, 454
BsiEI	CGRYCG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	213, 437
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	5 cut(s)	79, 159, 212, 219, 330
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	92, 454
Bsp1286I	GDGCHC	1 cut(s)	154
BspACI	CCGC	4 cut(s)	8, 131, 181, 254
BspANI	GGCC	2 cut(s)	92, 454
BspLI	GGNNCC	2 cut(s)	151, 314
BspMAI	CTGCAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	306, 359
BssECI	CCNNGG	3 cut(s)	73, 145, 360
BssT1I	CCWWGG	2 cut(s)	145, 360
Bst4CI	ACNGT	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	27, 375
BstV1I	GCAGC	3 cut(s)	19, 352, 389
BstV2I	GAAGAC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	92, 454
BtgI	CCRYGG	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	35, 494
Csp6I	GTAC	2 cut(s)	203, 223
CviAII	CATG	2 cut(s)	239, 431
CviQI	GTAC	2 cut(s)	203, 223
DdeI	CTNAG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	452
EagI	CGGCCG	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	145, 360
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	145, 360
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	145, 360
FaeI	CATG	2 cut(s)	242, 434
FaiI	YATR	6 cut(s)	29, 240, 263, 285, 396, 432
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	238, 430
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	9, 33, 366, 378
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	4 cut(s)	9, 33, 366, 378
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	9, 33, 366, 378
HaeIII	GGCC	2 cut(s)	92, 454
HapII	CCGG	2 cut(s)	213, 437
HgaI	GACGC	2 cut(s)	35, 494
Hin1II	CATG	2 cut(s)	242, 434
HincII	GTYRAC	2 cut(s)	85, 484
HindII	GTYRAC	2 cut(s)	85, 484
HinfI	GANTC	2 cut(s)	127, 334
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	213, 437
Hpy166II	GTNNAC	3 cut(s)	85, 446, 484
Hpy188I	TCNGA	2 cut(s)	108, 472
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	85, 446, 484
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	2 cut(s)	187, 419
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	24, 35, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	242, 434
KspAI	GTTAAC	1 cut(s)	85
LmnI	GCTCC	5 cut(s)	43, 149, 195, 251, 508
LpnPI	CCDG	6 cut(s)	211, 226, 316, 319, 340, 450
Lsp1109I	GCAGC	3 cut(s)	19, 352, 389
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	381
MbiI	CCGCTC	1 cut(s)	254
MboII	GAAGA	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	12, 102, 346
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	82, 92, 194, 216
MseI	TTAA	3 cut(s)	84, 156, 195
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	213, 437
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	213
NlaIII	CATG	2 cut(s)	242, 434
NlaIV	GGNNCC	2 cut(s)	151, 314
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	10, 34, 367, 379
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	151, 314
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	204, 224
RsaNI	GTAC	2 cut(s)	203, 223
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	84, 156, 195
SatI	GCNGC	4 cut(s)	9, 33, 366, 378
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	34, 56, 121, 208, 362, 382
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	2 cut(s)	27, 375
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	3 cut(s)	12, 102, 346
SsiI	CCGC	4 cut(s)	8, 131, 181, 254
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	145, 360
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	483
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	12, 102, 346
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	84, 156, 195
Tru9I	TTAA	3 cut(s)	84, 156, 195
TseI	GCWGC	3 cut(s)	32, 365, 377
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.