FvH4_6g11890

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001179
Physical Location & Seq
Forward (+)
7116186 .. 7119314
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11890.t1

Sequence Viewer

Length: 1515 bp
ATGTCGCAAGCAGCGGCATTGTCTCATCTTATGGATGCTGTCCAGACTCTGCCGAATTCGCTTACGACGTATATCATCTCGATAATTGCTACATACTTAACTGGTGTATGGGGGCTCAGTATCGTAAGCGTGGCGGTCATTGTGAATTTGTATTCAGGCATTGTTGGCATACTGCCGCTGGGATTAAAATTCATAGTGGATGCTTTCATCGGAAACTATTGGATTGTCTTGCTATCCAGACTTGCCTTCACTGCTGGCTTTGTGCTTTTGACATTATCAACCCCATCCGTCCTTTCTTGGGAGTCAGGACTGTCATTTCTCACAGTGGATTCGCCACCACCTGAATCTGAGCCATTCAAGAGGCCACAATCGGATGATTCTGAGGAGAACAACCGGGCAGGATTCTTCTGTGAGGCTCCTTTGGCTGGGGCATTAATCCTTTTTGTTCCTTTAGTATCATTTTTGGTGATTGGTTCATACCAACCTCAACCTAGAGCAGAAAGGAGCCTTGTTAAACACATTCTCAAGAGAAAACATGCTAGAAGCATCCTATTCTTGGTTCCTATATCCATCACCTTTATTCTACTAGGTGTTGTATCTTCTATTGGAAACACATTCTTCATCGAGCAAGCCGTCGACATGAATCACTATGTCGGGAGCTTGTGGGTTCCTCTACTCATCCTACCAATATTCCAACATTCTTACAAGAAGAAAAAACCACTAAACTGTGGTATTCATCCGAAATTGGGGATTGCATTCTCAATGATATGTGCAATTCTGAGTTGTATCACAGCTGCAAAAGTGGAGACTCGGAGGTTAGGCGTGGTCACAAGCCAGGGTGTGATTGACGAGCCTGAGAAAATCATTCCCATGACCATGTTTTGGTTGCTTCCACAGTTTGCTCTCCTCGGAGTGTCAGAAGCGATTTCAGAGAAGAACATCACTGATTTCTTCACCAATGAGTTGGCCCTCGAACGTAACGATGACGAGGCAACAAAAGCATCCAAGCGTAAGCATATGGAGTTCTTAGCACAGGCTCTTAGTGGAGTGGGAATGATATGCGGTTTGGTGTTGGTTTATATAGTGCGGAAGGCAACTGCTGCAAATGGAGGGACTAGTTGGTTCCAAAACACTCTAAACACGAGTCGTTTGGACAACTATTACTGGACCTTGGCTACTTTGAGTGCTGCTAATCTGGAAGGTGAGGACATGTATAATGAGATCAACGATGTGGAGGAGCAATGGTGCAAGAGACCTATCACAATGAACAATTGGCTACACCGTTGTTCCTCCATCATTGGGTACTTGACATATGAGGAACGCGAGTTGGAAGTCGAGGAAGCCGTGGCTGAAACTTTGATCCCTCTATGCTTCGAAACTCCTACTTTACTCTTAAATGTGCATGTATTGCTCGAAGTTGGGTGTTTAGCACCGTTGACGAGTCAAAGAGTCCCCCGCGGACATTTTGACCTTTCAATGTGTCCTACGTACGTGCGTGAGGTTGAAAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

505

Amino Acids

55.93

Weight (kDa)

5.66

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 882
AccI GTMKAC 1 cut(s) 636
AccII CGCG 2 cut(s) 1323, 1458
AciI CCGC 7 cut(s) 14, 134, 176, 1062, 1087, 1456, 1458
AclWI GGATC 1 cut(s) 1354
AcsI RAATTY 3 cut(s) 55, 145, 188
AfaI GTAC 2 cut(s) 1304, 1490
AfiI CCNNNNNNNGG 6 cut(s) 298, 425, 556, 746, 882, 1299
AflIII ACRYGT 1 cut(s) 1209
AgsI TTSAA 3 cut(s) 358, 1476, 1505
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 1 cut(s) 834
AluBI AGCT 2 cut(s) 660, 794
AluI AGCT 2 cut(s) 660, 794
Alw26I GTCTC 3 cut(s) 27, 800, 1246
AlwI GGATC 1 cut(s) 1354
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 2 cut(s) 362, 966
ApeKI GCWGC 4 cut(s) 11, 794, 1100, 1187
ApoI RAATTY 3 cut(s) 55, 145, 188
AseI ATTAAT 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 967, 1167
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 4 cut(s) 478, 565, 946, 1214
AsuII TTCGAA 1 cut(s) 1374
AvaII GGWCC 1 cut(s) 1167
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 1 cut(s) 1141
BbvI GCAGC 4 cut(s) 23, 781, 1087, 1174
BccI CCATC 3 cut(s) 292, 578, 1301
BceAI ACGGC 2 cut(s) 617, 1328
BciT130I CCWGG 1 cut(s) 836
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 27, 800, 1246
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 4 cut(s) 492, 540, 587, 1116
BisI GCNGC 6 cut(s) 12, 15, 176, 795, 1101, 1188
BlsI GCNGC 6 cut(s) 13, 16, 177, 796, 1102, 1189
Bme1390I CCNGG 2 cut(s) 395, 836
Bme18I GGWCC 1 cut(s) 1167
BmgT120I GGNCC 2 cut(s) 967, 1167
BmiI GGNNCC 5 cut(s) 417, 506, 561, 669, 1124
BmrFI CCNGG 2 cut(s) 395, 836
BmsI GCATC 4 cut(s) 25, 190, 555, 1010
Bpu14I TTCGAA 1 cut(s) 1374
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 2 cut(s) 1488, 1492
BsaI GGTCTC 1 cut(s) 1246
BsaJI CCNNGG 5 cut(s) 835, 907, 1170, 1344, 1456
BsaXI ACNNNNNCTCC 2 cut(s) 1229, 1259
Bsc4I CCNNNNNNNGG 6 cut(s) 298, 425, 556, 746, 882, 1299
Bse1I ACTGG 2 cut(s) 106, 1169
Bse3DI GCAATG 1 cut(s) 1247
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 5 cut(s) 835, 907, 1170, 1344, 1456
BseGI GGATG 8 cut(s) 40, 205, 284, 379, 546, 678, 736, 1001
BseLI CCNNNNNNNGG 6 cut(s) 298, 425, 556, 746, 882, 1299
BseMI GCAATG 1 cut(s) 1247
BseMII CTCAG 5 cut(s) 130, 339, 372, 770, 846
BseNI ACTGG 2 cut(s) 106, 1169
BseRI GAGGAG 3 cut(s) 398, 896, 1250
BseXI GCAGC 4 cut(s) 23, 781, 1087, 1174
BseYI CCCAGC 2 cut(s) 178, 425
Bsh1236I CGCG 2 cut(s) 1323, 1458
BshFI GGCC 2 cut(s) 364, 968
BsiSI CCGG 1 cut(s) 394
BsiWI CGTACG 1 cut(s) 1488
BslFI GGGAC 2 cut(s) 1126, 1436
BslI CCNNNNNNNGG 6 cut(s) 298, 425, 556, 746, 882, 1299
BsmAI GTCTC 3 cut(s) 27, 800, 1246
BsmFI GGGAC 2 cut(s) 1126, 1436
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 2 cut(s) 364, 968
Bso31I GGTCTC 1 cut(s) 1246
Bsp119I TTCGAA 1 cut(s) 1374
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 1221, 1359
BspACI CCGC 7 cut(s) 14, 134, 176, 1062, 1087, 1456, 1458
BspANI GGCC 2 cut(s) 364, 968
BspCNI CTCAG 5 cut(s) 129, 340, 373, 771, 847
BspFNI CGCG 2 cut(s) 1323, 1458
BspLI GGNNCC 5 cut(s) 417, 506, 561, 669, 1124
BspPI GGATC 1 cut(s) 1354
BspT104I TTCGAA 1 cut(s) 1374
BspTNI GGTCTC 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 1247
BsrI ACTGG 2 cut(s) 106, 1169
BssECI CCNNGG 5 cut(s) 835, 907, 1170, 1344, 1456
BssMI GATC 2 cut(s) 1221, 1359
BssSI CACGAG 1 cut(s) 1141
BssT1I CCWWGG 1 cut(s) 1170
Bst2BI CACGAG 1 cut(s) 1141
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 6 cut(s) 312, 325, 728, 897, 1283, 1434
BstAPI GCANNNNNTGC 2 cut(s) 1100, 1408
BstBAI YACGTR 2 cut(s) 1488, 1492
BstBI TTCGAA 1 cut(s) 1374
BstC8I GCNNGC 3 cut(s) 9, 256, 630
BstDEI CTNAG 7 cut(s) 116, 348, 381, 779, 855, 1027, 1040
BstDSI CCRYGG 2 cut(s) 1344, 1456
BstF5I GGATG 8 cut(s) 40, 205, 284, 379, 546, 678, 736, 1001
BstFNI CGCG 2 cut(s) 1323, 1458
BstKTI GATC 2 cut(s) 1224, 1362
BstMAI GTCTC 3 cut(s) 27, 800, 1246
BstMBI GATC 2 cut(s) 1221, 1359
BstMWI GCNNNNNNNGC 7 cut(s) 58, 165, 251, 422, 998, 1100, 1408
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 3 cut(s) 539, 1213, 1406
BstSCI CCNGG 2 cut(s) 393, 834
BstSNI TACGTA 1 cut(s) 1488
BstUI CGCG 2 cut(s) 1323, 1458
BstV1I GCAGC 4 cut(s) 23, 781, 1087, 1174
BstXI CCANNNNNNTGG 1 cut(s) 964
BsuRI GGCC 2 cut(s) 364, 968
BtgI CCRYGG 2 cut(s) 1344, 1456
BtsCI GGATG 8 cut(s) 40, 205, 284, 379, 546, 678, 736, 1001
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 330, 942
Cac8I GCNNGC 3 cut(s) 9, 256, 630
CaiI CAGNNNCTG 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 967, 1167
Cfr42I CCGCGG 1 cut(s) 1459
Csp6I GTAC 2 cut(s) 1303, 1489
CviAII CATG 6 cut(s) 536, 640, 871, 877, 1210, 1403
CviQI GTAC 2 cut(s) 1303, 1489
DdeI CTNAG 7 cut(s) 116, 348, 381, 779, 855, 1027, 1040
DpnI GATC 2 cut(s) 1223, 1361
DpnII GATC 2 cut(s) 1221, 1359
Eco105I TACGTA 1 cut(s) 1488
Eco130I CCWWGG 1 cut(s) 1170
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 1246
Eco47I GGWCC 1 cut(s) 1167
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 834
EcoT14I CCWWGG 1 cut(s) 1170
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 1170
FaeI CATG 6 cut(s) 539, 643, 874, 880, 1213, 1406
FaqI GGGAC 2 cut(s) 1126, 1436
FatI CATG 6 cut(s) 535, 639, 870, 876, 1209, 1402
FauI CCCGC 1 cut(s) 1463
FauNDI CATATG 2 cut(s) 1017, 1312
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 12, 15, 176, 795, 1101, 1188
FokI GGATG 8 cut(s) 47, 212, 271, 386, 533, 665, 723, 988
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 6 cut(s) 12, 15, 176, 795, 1101, 1188
FspBI CTAG 4 cut(s) 492, 540, 587, 1116
GluI GCNGC 6 cut(s) 12, 15, 176, 795, 1101, 1188
GsaI CCCAGC 2 cut(s) 182, 429
HaeIII GGCC 2 cut(s) 364, 968
HapII CCGG 1 cut(s) 394
Hin1II CATG 6 cut(s) 539, 643, 874, 880, 1213, 1406
HincII GTYRAC 2 cut(s) 637, 1437
HindII GTYRAC 2 cut(s) 637, 1437
HpaII CCGG 1 cut(s) 394
HphI GGTGA 4 cut(s) 478, 565, 946, 1214
Hpy166II GTNNAC 2 cut(s) 637, 1437
Hpy188III TCNNGA 8 cut(s) 43, 79, 237, 306, 358, 526, 655, 1196
Hpy8I GTNNAC 2 cut(s) 637, 1437
Hpy99I CGWCG 2 cut(s) 70, 638
HpyAV CCTTC 3 cut(s) 256, 1084, 1193
HpyCH4III ACNGT 6 cut(s) 312, 325, 728, 897, 1283, 1434
HpyCH4IV ACGT 4 cut(s) 68, 976, 1487, 1491
HpyCH4V TGCA 6 cut(s) 755, 773, 797, 1103, 1248, 1402
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 165, 251, 422, 998, 1100, 1408
HpyF3I CTNAG 7 cut(s) 116, 348, 381, 779, 855, 1027, 1040
HpySE526I ACGT 4 cut(s) 68, 976, 1487, 1491
Hsp92II CATG 6 cut(s) 539, 643, 874, 880, 1213, 1406
KspI CCGCGG 1 cut(s) 1459
Kzo9I GATC 2 cut(s) 1221, 1359
LmnI GCTCC 4 cut(s) 421, 504, 657, 1237
Lsp1109I GCAGC 4 cut(s) 23, 781, 1087, 1174
LweI GCATC 4 cut(s) 25, 190, 555, 1010
MaeI CTAG 4 cut(s) 492, 540, 587, 1116
MaeII ACGT 4 cut(s) 68, 976, 1487, 1491
MaeIII GTNAC 2 cut(s) 826, 977
MalI GATC 2 cut(s) 1223, 1361
MboI GATC 2 cut(s) 1221, 1359
MboII GAAGA 6 cut(s) 397, 591, 610, 721, 943, 946
MfeI CAATTG 1 cut(s) 1270
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 7 cut(s) 55, 84, 145, 188, 743, 774, 1270
MlyI GAGTC 6 cut(s) 40, 311, 802, 1153, 1450, 1458
MmeI TCCRAC 2 cut(s) 718, 1308
MseI TTAA 5 cut(s) 98, 185, 434, 513, 1394
MslI CAYNNNNRTG 2 cut(s) 869, 875
MspA1I CMGCKG 4 cut(s) 14, 178, 794, 1458
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 2 cut(s) 395, 836
MunI CAATTG 1 cut(s) 1270
Mva1269I GAATGC 1 cut(s) 755
MvaI CCWGG 1 cut(s) 836
MvnI CGCG 2 cut(s) 1323, 1458
MwoI GCNNNNNNNGC 7 cut(s) 58, 165, 251, 422, 998, 1100, 1408
NciI CCSGG 1 cut(s) 395
NdeI CATATG 2 cut(s) 1017, 1312
NdeII GATC 2 cut(s) 1221, 1359
NlaIII CATG 6 cut(s) 539, 643, 874, 880, 1213, 1406
NlaIV GGNNCC 5 cut(s) 417, 506, 561, 669, 1124
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 3 cut(s) 539, 1213, 1406
NspV TTCGAA 1 cut(s) 1374
PciI ACATGT 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 4 cut(s) 65, 630, 978, 1341
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 5 cut(s) 329, 344, 377, 402, 643
Pfl23II CGTACG 1 cut(s) 1488
PflMI CCANNNNNTGG 1 cut(s) 882
PkrI GCNGC 6 cut(s) 13, 16, 177, 796, 1102, 1189
PleI GAGTC 6 cut(s) 40, 310, 802, 1152, 1449, 1457
PpsI GAGTC 6 cut(s) 40, 310, 802, 1152, 1449, 1457
Ppu21I YACGTR 2 cut(s) 1488, 1492
PscI ACATGT 1 cut(s) 1209
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 834
PspFI CCCAGC 2 cut(s) 178, 425
PspGI CCWGG 1 cut(s) 834
PspLI CGTACG 1 cut(s) 1488
PspN4I GGNNCC 5 cut(s) 417, 506, 561, 669, 1124
PspPI GGNCC 2 cut(s) 967, 1167
PstNI CAGNNNCTG 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 2 cut(s) 1304, 1490
RsaNI GTAC 2 cut(s) 1303, 1489
RseI CAYNNNNRTG 2 cut(s) 869, 875
SacII CCGCGG 1 cut(s) 1459
SalI GTCGAC 1 cut(s) 635
SaqAI TTAA 5 cut(s) 98, 185, 434, 513, 1394
SatI GCNGC 6 cut(s) 12, 15, 176, 795, 1101, 1188
Sau3AI GATC 2 cut(s) 1221, 1359
Sau96I GGNCC 2 cut(s) 967, 1167
SchI GAGTC 6 cut(s) 40, 311, 802, 1153, 1450, 1458
ScrFI CCNGG 2 cut(s) 395, 836
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 4 cut(s) 25, 190, 555, 1010
Sfr303I CCGCGG 1 cut(s) 1459
SfuI TTCGAA 1 cut(s) 1374
SgrBI CCGCGG 1 cut(s) 1459
SinI GGWCC 1 cut(s) 1167
SmiMI CAYNNNNRTG 2 cut(s) 869, 875
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SnaBI TACGTA 1 cut(s) 1488
SpeI ACTAGT 1 cut(s) 1115
Sse9I AATT 7 cut(s) 55, 84, 145, 188, 743, 774, 1270
SsiI CCGC 7 cut(s) 14, 134, 176, 1062, 1087, 1456, 1458
SspI AATATT 1 cut(s) 690
SspMI CTAG 4 cut(s) 492, 540, 587, 1116
StyD4I CCNGG 2 cut(s) 393, 834
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 6 cut(s) 312, 325, 728, 897, 1283, 1434
TaiI ACGT 4 cut(s) 71, 979, 1490, 1494
TaqI TCGA 7 cut(s) 80, 624, 636, 972, 1335, 1374, 1413
TasI AATT 7 cut(s) 55, 84, 145, 188, 743, 774, 1270
TauI GCSGC 2 cut(s) 17, 178
TfiI GAWTC 5 cut(s) 329, 344, 377, 402, 643
Tru1I TTAA 5 cut(s) 98, 185, 434, 513, 1394
Tru9I TTAA 5 cut(s) 98, 185, 434, 513, 1394
TscAI CASTG 3 cut(s) 256, 330, 949
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 4 cut(s) 11, 794, 1100, 1187
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 7 cut(s) 181, 196, 465, 610, 656, 725, 1280
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 3 cut(s) 256, 330, 949
Van91I CCANNNNNTGG 1 cut(s) 882
VpaK11BI GGWCC 1 cut(s) 1167
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 3 cut(s) 55, 145, 188
XceI RCATGY 3 cut(s) 539, 1213, 1406
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 492, 540, 587, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.