Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001366.1

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

23970 .. 25289

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001366.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgtcaacaccaccaattctttatgtggcaacaggcacttgtggtgcatatgaggccgagtgcattggcaaagtacaaaagattctcttttacacagccttaactctaatagctctgggagcctctggtcgctttatggttcgtgcattcagagaagagcagttgatcaagccactattagaaggcgccaaaaaaatgaagttttttgctctgtcagtgtgccctaagaaagtaaggttgctgtcatttcaaattctggtctccaccctggtacttgggacaactgcttatttaaagccttggtcgcttaggtttgggttccctgctatatttaccttgcttgcaacaattactttattgacaagtactatacgtccacacaaagcacaaagaaaccttttcaccagggaagaaatcagaagcatcttgcgcatgagtcctatatgtattttccttattccaattggtgttgtatcgtctcttggaaatacttattttactgaacaagcaagcaagatgaatcacagggttggatccttaaaggtttctgttcttttccttatagtgccccgaagtttgatgagaaaatggtttagccaatcaaaatattgtgctaataagattattactccgagaattgggatttcattgtcgatggcattggcgattctatgttgtatcacagctgcattagtggaaaacagaaggttgggcgtggttaagagacatggtttacttaacaagcccgatgagacagttcccatgaccatgttctggttgcttccacagtttcttctcgttggaggcgtttctgggctttccgagaagtgcattgctcttttctacactgatgtggtgcttcactggccgaaaatagaaaatgatgtcgatatacaagcaaaggacaaacccaattccaaagaacaaaacattaagtcccccatggaacaggcaaacgaaacactcaagcctacagaaaagaatgatgaggaccccaatcaggcaaaacaagaaacaaagagtacggaaaaagatggtgaggggcacattgatcccgaaagggcagaacaaaaatccaagcgtcaatacatagagttttttgttgatgctcttgagggaatgggaaatataggcagtgtggtgttggtctatgtagtgggtgaaataaaacctacttggttccaagaaacggtaaaccgaagtcatttggataattattactggactttggctgcattgactgcagctaatttgatattgtttattccagtaatattcttcctgttgaggtcaaagaaattcactgcattgtttgcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

439

Amino Acids

49.41

Weight (kDa)

9.47

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	774
AclWI	GGATC	3 cut(s)	528, 541, 1046
AcoI	YGGCCR	1 cut(s)	866
AcsI	RAATTY	2 cut(s)	252, 1298
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	75, 273, 367, 1024
AfiI	CCNNNNNNNGG	4 cut(s)	638, 774, 1000, 1189
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	267, 404
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	3 cut(s)	113, 686, 1247
AluI	AGCT	3 cut(s)	113, 686, 1247
Alw26I	GTCTC	4 cut(s)	265, 483, 718, 746
AlwI	GGATC	3 cut(s)	528, 541, 1046
AoxI	GGCC	2 cut(s)	54, 866
ApeKI	GCWGC	3 cut(s)	686, 1232, 1244
ApoI	RAATTY	2 cut(s)	252, 1298
AspLEI	GCGC	2 cut(s)	188, 432
AspS9I	GGNCC	1 cut(s)	991
AsuHPI	GGTGA	3 cut(s)	394, 1049, 1172
AvaII	GGWCC	1 cut(s)	991
BaeGI	GKGCMC	3 cut(s)	224, 570, 1047
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	673, 1219, 1256
BccI	CCATC	2 cut(s)	649, 1028
BciT130I	CCWGG	2 cut(s)	269, 406
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	265, 483, 718, 746
BfmI	CTRYAG	2 cut(s)	972, 1242
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	3 cut(s)	687, 1233, 1245
BlsI	GCNGC	3 cut(s)	688, 1234, 1246
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	269, 406
Bme18I	GGWCC	1 cut(s)	991
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	6 cut(s)	121, 187, 320, 535, 993, 1181
BmrFI	CCNGG	2 cut(s)	269, 406
BmsI	GCATC	2 cut(s)	432, 1096
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	950, 1133
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	4 cut(s)	267, 299, 405, 942
Bsc4I	CCNNNNNNNGG	4 cut(s)	638, 774, 1000, 1189
Bse1I	ACTGG	3 cut(s)	869, 1226, 1268
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	269, 406
BseDI	CCNNGG	4 cut(s)	267, 299, 405, 942
BseLI	CCNNNNNNNGG	4 cut(s)	638, 774, 1000, 1189
BseMI	GCAATG	1 cut(s)	831
BseNI	ACTGG	3 cut(s)	869, 1226, 1268
BseSI	GKGCMC	3 cut(s)	224, 570, 1047
BseXI	GCAGC	3 cut(s)	673, 1219, 1256
BshFI	GGCC	2 cut(s)	56, 868
BshNI	GGYRCC	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	292, 922
BslI	CCNNNNNNNGG	4 cut(s)	638, 774, 1000, 1189
BsmAI	GTCTC	4 cut(s)	265, 483, 718, 746
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	2 cut(s)	292, 922
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	56, 868
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	224, 570, 1047
Bsp143I	GATC	3 cut(s)	165, 533, 1051
Bsp19I	CCATGG	1 cut(s)	942
BspANI	GGCC	2 cut(s)	56, 868
BspLI	GGNNCC	6 cut(s)	121, 187, 320, 535, 993, 1181
BspMAI	CTGCAG	1 cut(s)	1246
BspPI	GGATC	3 cut(s)	528, 541, 1046
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	869, 1226, 1268
BssECI	CCNNGG	4 cut(s)	267, 299, 405, 942
BssMI	GATC	3 cut(s)	165, 533, 1051
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	299, 942
Bst2UI	CCWGG	2 cut(s)	269, 406
Bst4CI	ACNGT	3 cut(s)	757, 789, 1192
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	2 cut(s)	1241, 1313
BstC8I	GCNNGC	2 cut(s)	342, 511
BstDEI	CTNAG	2 cut(s)	225, 308
BstDSI	CCRYGG	1 cut(s)	942
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 432
BstKTI	GATC	3 cut(s)	168, 536, 1054
BstMAI	GTCTC	4 cut(s)	265, 483, 718, 746
BstMBI	GATC	3 cut(s)	165, 533, 1051
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 119, 304, 429, 865, 1241, 1313
BstNI	CCWGG	2 cut(s)	269, 406
BstSCI	CCNGG	2 cut(s)	267, 404
BstSFI	CTRYAG	2 cut(s)	972, 1242
BstSLI	GKGCMC	3 cut(s)	224, 570, 1047
BstV1I	GCAGC	3 cut(s)	673, 1219, 1256
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	56, 868
BtgI	CCRYGG	1 cut(s)	942
BtsI	GCAGTG	2 cut(s)	1141, 1302
BtsIMutI	CAGTG	5 cut(s)	222, 846, 862, 1141, 1302
Cac8I	GCNNGC	2 cut(s)	342, 511
CfoI	GCGC	2 cut(s)	188, 432
Cfr13I	GGNCC	1 cut(s)	991
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	4 cut(s)	74, 272, 366, 1023
CviAII	CATG	5 cut(s)	433, 728, 763, 769, 943
CviQI	GTAC	4 cut(s)	74, 272, 366, 1023
DdeI	CTNAG	2 cut(s)	225, 308
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	3 cut(s)	167, 535, 1053
DpnII	GATC	3 cut(s)	165, 533, 1051
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	866
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	299, 942
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	991
EcoO109I	RGGNCCY	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	267, 404
EcoT14I	CCWWGG	2 cut(s)	299, 942
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	299, 942
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	5 cut(s)	436, 731, 766, 772, 946
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	2 cut(s)	292, 922
FatI	CATG	5 cut(s)	432, 727, 762, 768, 942
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	687, 1233, 1245
Fsp4HI	GCNGC	3 cut(s)	687, 1233, 1245
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	2 cut(s)	187, 431
GluI	GCNGC	3 cut(s)	687, 1233, 1245
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	56, 868
HgaI	GACGC	1 cut(s)	1070
HhaI	GCGC	2 cut(s)	188, 432
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	436, 731, 766, 772, 946
Hin6I	GCGC	2 cut(s)	186, 430
HinP1I	GCGC	2 cut(s)	186, 430
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	82, 436, 520, 667
HphI	GGTGA	3 cut(s)	394, 1049, 1172
Hpy166II	GTNNAC	4 cut(s)	6, 377, 734, 1195
Hpy188I	TCNGA	4 cut(s)	152, 419, 633, 823
Hpy188III	TCNNGA	2 cut(s)	1055, 1112
Hpy8I	GTNNAC	4 cut(s)	6, 377, 734, 1195
HpyAV	CCTTC	2 cut(s)	176, 699
HpyCH4III	ACNGT	3 cut(s)	757, 789, 1192
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	9 cut(s)	47, 63, 146, 344, 689, 831, 1235, 1244, 1307
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 119, 304, 429, 865, 1241, 1313
HpyF3I	CTNAG	2 cut(s)	225, 308
HpySE526I	ACGT	1 cut(s)	373
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	436, 731, 766, 772, 946
HspAI	GCGC	2 cut(s)	186, 430
KasI	GGCGCC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 533, 1051
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	673, 1219, 1256
LweI	GCATC	2 cut(s)	432, 1096
MaeII	ACGT	1 cut(s)	373
MalI	GATC	3 cut(s)	167, 535, 1053
MboI	GATC	3 cut(s)	165, 533, 1051
MboII	GAAGA	4 cut(s)	167, 422, 785, 1270
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	3 cut(s)	224, 570, 1047
MluCI	AATT	9 cut(s)	15, 252, 348, 462, 636, 913, 1213, 1249, 1298
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	2 cut(s)	511, 781
MnlI	CCTC	7 cut(s)	46, 133, 797, 982, 1033, 1108, 1281
MseI	TTAA	6 cut(s)	101, 293, 539, 720, 738, 933
MslI	CAYNNNNRTG	2 cut(s)	767, 851
MspA1I	CMGCKG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	269, 406
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	269, 406
MwoI	GCNNNNNNNGC	7 cut(s)	53, 119, 304, 429, 865, 1241, 1313
NarI	GGCGCC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	942
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	3 cut(s)	165, 533, 1051
NlaIII	CATG	5 cut(s)	436, 731, 766, 772, 946
NlaIV	GGNNCC	6 cut(s)	121, 187, 320, 535, 993, 1181
NmeAIII	GCCGAG	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	851
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	82, 520, 667
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	3 cut(s)	688, 1234, 1246
PleI	GAGTC	1 cut(s)	444
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	991
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	2 cut(s)	267, 404
PspGI	CCWGG	2 cut(s)	267, 404
PspN4I	GGNNCC	6 cut(s)	121, 187, 320, 535, 993, 1181
PspPI	GGNCC	1 cut(s)	991
PspPPI	RGGWCCY	1 cut(s)	991
PstI	CTGCAG	1 cut(s)	1246
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	4 cut(s)	75, 273, 367, 1024
RsaNI	GTAC	4 cut(s)	74, 272, 366, 1023
RseI	CAYNNNNRTG	2 cut(s)	767, 851
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	101, 293, 539, 720, 738, 933
SatI	GCNGC	3 cut(s)	687, 1233, 1245
Sau3AI	GATC	3 cut(s)	165, 533, 1051
Sau96I	GGNCC	1 cut(s)	991
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	269, 406
SduI	GDGCHC	3 cut(s)	224, 570, 1047
SfaNI	GCATC	2 cut(s)	432, 1096
SfcI	CTRYAG	2 cut(s)	972, 1242
SfoI	GGCGCC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	991
SmiMI	CAYNNNNRTG	2 cut(s)	767, 851
SmlI	CTYRAG	2 cut(s)	965, 1112
SmoI	CTYRAG	2 cut(s)	965, 1112
Sse9I	AATT	9 cut(s)	15, 252, 348, 462, 636, 913, 1213, 1249, 1298
SspDI	GGCGCC	1 cut(s)	185
SspI	AATATT	2 cut(s)	608, 1275
StyD4I	CCNGG	2 cut(s)	267, 404
StyI	CCWWGG	2 cut(s)	299, 942
TaaI	ACNGT	3 cut(s)	757, 789, 1192
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	653, 888
TasI	AATT	9 cut(s)	15, 252, 348, 462, 636, 913, 1213, 1249, 1298
TatI	WGTACW	2 cut(s)	73, 365
TfiI	GAWTC	3 cut(s)	82, 520, 667
Tru1I	TTAA	6 cut(s)	101, 293, 539, 720, 738, 933
Tru9I	TTAA	6 cut(s)	101, 293, 539, 720, 738, 933
TscAI	CASTG	5 cut(s)	222, 853, 869, 1141, 1309
TseI	GCWGC	3 cut(s)	686, 1232, 1244
TspDTI	ATGAA	3 cut(s)	212, 533, 636
TspGWI	ACGGA	1 cut(s)	1040
TspRI	CASTG	5 cut(s)	222, 853, 869, 1141, 1309
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	991
XapI	RAATTY	2 cut(s)	252, 1298
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.