Rh5AG399700

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001179
Physical Location & Seq
Reverse (-)
69277390 .. 69277796
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG399700.1

Sequence Viewer

Length: 273 bp
ATGGCATTCCCAAATCCATCTGGGTCGGTTGCATGGCTATGTCACCTCCTTTATAGGGCAACAGGCACTTGTAGTGCATATGAGGCCGAGTGCCTTATTGGCAAAGTACAAAAGATTCTCTTTTACACAGCATTACCTCTAATAGCTCTGGGAGTCTTTGGGGGCTTTATGGTTGATGCATTCAAAGAAGAGCAGTTGATCAAGCCACTATTAGAAGGCACCAAGACAATGAAGTTGTTTTGTTGGTCAGTGCCTAAGAGAATGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

90

Amino Acids

10.03

Weight (kDa)

9.0

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AoxI GGCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 218
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 55
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 55
BsmI GAATGC 2 cut(s) 5, 179
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 218
BssMI GATC 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 83, 99
BsuRI GGCC 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 255
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 33
CviJI RGCY 5 cut(s) 37, 86, 146, 165, 205
CviKI_1 RGCY 5 cut(s) 37, 86, 146, 165, 205
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 1 cut(s) 36
FaiI YATR 6 cut(s) 34, 40, 54, 79, 81, 170
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 32
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 198
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 1 cut(s) 36
HinfI GANTC 2 cut(s) 115, 153
HphI GGTGA 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 32, 77, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 99
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LguI GCTCTTC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 6, 48, 134
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 3 cut(s) 56, 76, 147
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 37
Mva1269I GAATGC 2 cut(s) 5, 179
MwoI GCNNNNNNNGC 2 cut(s) 83, 99
NdeI CATATG 1 cut(s) 79
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 183
PctI GAATGC 2 cut(s) 5, 179
PfeI GAWTC 1 cut(s) 115
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 1 cut(s) 162
SetI ASST 3 cut(s) 48, 139, 148
SfaNI GCATC 1 cut(s) 166
SgeI CNNG 8 cut(s) 33, 45, 75, 81, 100, 161, 214, 235
SmiMI CAYNNNNRTG 1 cut(s) 37
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.