AT2G42560

Late embryogenesis abundant domain-containing protein LEA domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17714638 .. 17716912
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42560.1

Sequence Viewer

Length: 1908 bp
ATGGCGTCAGAGCAAGCAAGGAGAGAAAACAAGGTGACGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCAAAGATGACGAGTCATTTCGAGTCCATGGCCGAAAAAGGCAAAGATTCCGACACACACAGGCATCAAACAGAAGGTGGTGGGACACAGTTCGTGTCTCTCTCAGACAAGGGGAGTAACATGCCGGTTTCTGATGAAGGAGAGGGAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTTGGAAAATTCGTTACTAGCAGCGATTCAGGAACAGGGAAGAAGAAGGATGAGAAAGAGGAGCATGAGAAGGCGTCGCTAGAGGATATTCATGGGTATAGAGCCAATGCTCAGCAGAAGTCAATGGATAGTATAAAAGCAGCAGAGGAAAGGTATAACAAGGCTAAGGAGAGTTTGAGCCATAGTGGACAAGAAGCTCGTGGAGGAAGAGGTGAAGAAATGGTGGGAAAAGGGCGGGACAGTGGTGTCCGTGTTTCTCACGTTGGGGCTGTTGGTGGCGGTGGTGGAGGTGAGGAAAAAGAGAGTGGTGTACATGGCTTTCATGGGGAGAAAGCACGACATGCTGAGCTTTTGGCTGCCGGAGGTGAGGAGATGAGAGAACGTGAAGGTAAAGAATCAGCAGGTGGTGTTGGTGGTCGTAGCGTAAAAGATACGGTAGCCGAGAAAGGACAGCAAGCTAAGGAAAGTGTAGGAGAAGGTGCTCAGAAAGCGGGCAGTGCTACGAGTGAGAAAGCTCAGAGAGCTTCCGAGTATGCAACAGAGAAAGGAAAAGAAGCTGGAAATATGACAGCTGAACAGGCGGCGAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGAAGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGGAAGCACAGCGGCTGAACAGGCTGCGAGAGCTAAAGATTACACTCTTCAGAAAGCTGTGGAAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAATACATGACAGAGACAGGAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGGCAAGAGGCAGCTTCAATGACAGCAAAAGCTAAAGATTATACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACATAAAAGAAACGACAGTGGAAGGAGGAAAAGGAGCTGCACATTATGCAGGAGTGGCAGCTGAGAAAGCCGCTGCGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACGAAAGCGGTTGCAGGTACAGTGGAAGGTGCTGTGGGGTACGCAGGGCATAAGGCGGTGGAAGTAGGATCTAAGGCAGTGGACTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTTGGGTATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTGAGGAAGAAAAGCAACCAGGGTTTGTCTCAGGAGCAAGGAGAGACTTTGGAGAAGAGTACGGGGAAGAAAGAGGGAGTGAGAAAGATGTCTACGGCTATGGAGCAAAAGGAATACCCGGAGAAGGGAGGGGAGATGTTGGGGAGGCAGAGTACGGAAGAGGGAGTGAGAAAGATGTCTTCGGATATGGACCAAAAGGCACGGTCGAAGAAGCAAGGAGAGACGTTGGAGAAGAATACGGAGGAGGAAGAGGCAGTGAGAGATATGTTGAAGAAGAAGGGGTTGGAGCGGGAGGGGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGTGATTGGTGATGCGCCTGTGAGGACACATGAGCATGGAACTACTGATCCTGACTATATGAGACGGGAACATGGACAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

635

Amino Acids

67.19

Weight (kDa)

5.78

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_4 PF02987 262 - 303 6e-08 Late embryogenesis abundant protein
LEA_4 PF02987 309 - 342 2.4e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
AasI GACNNNNNNGTC 1 cut(s) 500
Acc36I ACCTGC 2 cut(s) 647, 1289
AccBSI CCGCTC 1 cut(s) 1760
AccI GTMKAC 2 cut(s) 1415, 1563
AclI AACGTT 1 cut(s) 1903
AclWI GGATC 2 cut(s) 1360, 1865
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 965, 1017
AcyI GRCGYC 2 cut(s) 5, 329
AfaI GTAC 6 cut(s) 567, 1160, 1303, 1325, 1532, 1625
AfiI CCNNNNNNNGG 2 cut(s) 1595, 1596
AgsI TTSAA 3 cut(s) 875, 1104, 1742
AjnI CCWGG 1 cut(s) 1489
AjuI GAANNNNNNNTTGG 2 cut(s) 1737, 1769
AloI GAACNNNNNNTCC 2 cut(s) 1855, 1887
Alw21I GWGCWC 1 cut(s) 739
AlwI GGATC 2 cut(s) 1360, 1865
AlwNI CAGNNNCTG 2 cut(s) 947, 1394
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 1840
AspS9I GGNCC 1 cut(s) 1661
AsuC2I CCSGG 1 cut(s) 1590
AsuHPI GGTGA 8 cut(s) 46, 479, 557, 632, 1157, 1252, 1484, 1844
AvaII GGWCC 1 cut(s) 1661
BaeI ACNNNNGTAYC 2 cut(s) 1392, 1425
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 1642
Bbv12I GWGCWC 1 cut(s) 739
BceAI ACGGC 2 cut(s) 1434, 1582
BciT130I CCWGG 1 cut(s) 1491
BcnI CCSGG 1 cut(s) 1590
BfaI CTAG 2 cut(s) 273, 335
BfmI CTRYAG 3 cut(s) 860, 1386, 1791
BfuAI ACCTGC 2 cut(s) 647, 1289
BlpI GCTNAGC 2 cut(s) 366, 600
Bme1390I CCNGG 2 cut(s) 1491, 1590
Bme18I GGWCC 1 cut(s) 1661
BmgT120I GGNCC 1 cut(s) 1661
BmrFI CCNGG 2 cut(s) 1491, 1590
BmsI GCATC 5 cut(s) 145, 234, 1449, 1471, 1825
BpiI GAAGAC 1 cut(s) 1642
Bpu10I CCTNAGC 2 cut(s) 420, 714
Bpu1102I GCTNAGC 2 cut(s) 366, 600
BpuMI CCSGG 1 cut(s) 1590
BsaHI GRCGYC 2 cut(s) 5, 329
BsaI GGTCTC 1 cut(s) 1443
BsaJI CCNNGG 3 cut(s) 99, 1263, 1490
BsaXI ACNNNNNCTCC 2 cut(s) 1607, 1637
Bsc4I CCNNNNNNNGG 2 cut(s) 1595, 1596
Bse118I RCCGGY 2 cut(s) 196, 1142
BseBI CCWGG 1 cut(s) 1491
BseDI CCNNGG 3 cut(s) 99, 1263, 1490
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 1595, 1596
BseRI GAGGAG 3 cut(s) 329, 638, 1728
BseYI CCCAGC 1 cut(s) 1154
BsgI GTGCAG 1 cut(s) 1182
Bsh1285I CGRYCG 1 cut(s) 1677
BshFI GGCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 1677
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 5 cut(s) 197, 615, 1065, 1143, 1590
BslFI GGGAC 4 cut(s) 56, 169, 506, 1297
BslI CCNNNNNNNGG 2 cut(s) 1595, 1596
BsmBI CGTCTC 3 cut(s) 215, 1686, 1879
BsmFI GGGAC 4 cut(s) 56, 169, 506, 1297
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 1443
Bsp1286I GDGCHC 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 2 cut(s) 1352, 1870
Bsp1720I GCTNAGC 2 cut(s) 366, 600
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 1 cut(s) 104
BspMAI CTGCAG 2 cut(s) 864, 1390
BspMI ACCTGC 2 cut(s) 647, 1289
BspPI GGATC 2 cut(s) 1360, 1865
BspTNI GGTCTC 1 cut(s) 1443
BsrBI CCGCTC 1 cut(s) 1760
BsrFI RCCGGY 2 cut(s) 196, 1142
BsrGI TGTACA 1 cut(s) 565
BssAI RCCGGY 2 cut(s) 196, 1142
BssECI CCNNGG 3 cut(s) 99, 1263, 1490
BssMI GATC 2 cut(s) 1352, 1870
BssNAI GTATAC 1 cut(s) 1416
BssNI GRCGYC 2 cut(s) 5, 329
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 1491
Bst4CI ACNGT 8 cut(s) 162, 497, 691, 1132, 1177, 1306, 1405, 1675
Bst6I CTCTTC 6 cut(s) 227, 457, 984, 1521, 1624, 1714
BstACI GRCGYC 2 cut(s) 5, 329
BstAPI GCANNNNNTGC 3 cut(s) 596, 1205, 1394
BstAUI TGTACA 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 15, 711, 748
BstDSI CCRYGG 2 cut(s) 99, 1263
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 1840
BstKTI GATC 2 cut(s) 1355, 1873
BstMBI GATC 2 cut(s) 1352, 1870
BstMCI CGRYCG 1 cut(s) 1677
BstNI CCWGG 1 cut(s) 1491
BstNSI RCATGY 2 cut(s) 196, 599
BstSCI CCNGG 2 cut(s) 1489, 1588
BstSFI CTRYAG 3 cut(s) 860, 1386, 1791
BstV2I GAAGAC 1 cut(s) 1642
BstX2I RGATCY 1 cut(s) 1352
BstYI RGATCY 1 cut(s) 1352
BstZ17I GTATAC 1 cut(s) 1416
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 2 cut(s) 99, 1263
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 4 cut(s) 757, 1368, 1395, 1732
BtsIMutI CAGTG 7 cut(s) 502, 757, 1182, 1311, 1368, 1395, 1732
BveI ACCTGC 2 cut(s) 647, 1289
Cac8I GCNNGC 3 cut(s) 15, 711, 748
CaiI CAGNNNCTG 2 cut(s) 947, 1394
CfoI GCGC 1 cut(s) 1840
Cfr10I RCCGGY 2 cut(s) 196, 1142
Cfr13I GGNCC 1 cut(s) 1661
CseI GACGC 1 cut(s) 318
Csp6I GTAC 6 cut(s) 566, 1159, 1302, 1324, 1531, 1624
CviQI GTAC 6 cut(s) 566, 1159, 1302, 1324, 1531, 1624
DpnI GATC 2 cut(s) 1354, 1872
DpnII GATC 2 cut(s) 1352, 1870
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 6 cut(s) 227, 457, 984, 1521, 1624, 1714
EarI CTCTTC 6 cut(s) 227, 457, 984, 1521, 1624, 1714
EciI GGCGGA 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 1443
Eco47I GGWCC 1 cut(s) 1661
Eco57I CTGAAG 2 cut(s) 965, 1017
EcoRII CCWGG 1 cut(s) 1489
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 1464
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 3 cut(s) 215, 1686, 1879
FaqI GGGAC 4 cut(s) 56, 169, 506, 1297
FauI CCCGC 3 cut(s) 483, 739, 1753
FblI GTMKAC 2 cut(s) 1415, 1563
FokI GGATG 1 cut(s) 317
FspBI CTAG 2 cut(s) 273, 335
GlaI GCGC 1 cut(s) 1839
GsaI CCCAGC 1 cut(s) 1158
HaeIII GGCC 1 cut(s) 104
HapII CCGG 5 cut(s) 197, 615, 1065, 1143, 1590
HgaI GACGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 1840
Hin1I GRCGYC 2 cut(s) 5, 329
Hin6I GCGC 1 cut(s) 1838
HinP1I GCGC 1 cut(s) 1838
HinfI GANTC 7 cut(s) 69, 85, 95, 119, 238, 281, 650
HpaII CCGG 5 cut(s) 197, 615, 1065, 1143, 1590
HphI GGTGA 8 cut(s) 46, 479, 557, 632, 1157, 1252, 1484, 1844
Hpy166II GTNNAC 6 cut(s) 443, 566, 1245, 1366, 1416, 1564
Hpy188III TCNNGA 3 cut(s) 285, 1503, 1874
Hpy8I GTNNAC 6 cut(s) 443, 566, 1245, 1366, 1416, 1564
Hpy99I CGWCG 1 cut(s) 334
HpyCH4III ACNGT 8 cut(s) 162, 497, 691, 1132, 1177, 1306, 1405, 1675
HpyCH4IV ACGT 4 cut(s) 516, 637, 1695, 1903
HpySE526I ACGT 4 cut(s) 516, 637, 1695, 1903
Hsp92I GRCGYC 2 cut(s) 5, 329
HspAI GCGC 1 cut(s) 1838
Kzo9I GATC 2 cut(s) 1352, 1870
LmnI GCTCC 5 cut(s) 316, 1193, 1505, 1574, 1757
LweI GCATC 5 cut(s) 145, 234, 1449, 1471, 1825
MaeI CTAG 2 cut(s) 273, 335
MaeII ACGT 4 cut(s) 516, 637, 1695, 1903
MaeIII GTNAC 3 cut(s) 34, 188, 268
MalI GATC 2 cut(s) 1354, 1872
MbiI CCGCTC 1 cut(s) 1760
MboI GATC 2 cut(s) 1352, 1870
MflI RGATCY 1 cut(s) 1352
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 1 cut(s) 263
MlyI GAGTC 4 cut(s) 78, 94, 104, 232
MmeI TCCRAC 4 cut(s) 147, 238, 1678, 1735
Mph1103I ATGCAT 1 cut(s) 1464
MslI CAYNNNNRTG 1 cut(s) 1857
MspA1I CMGCKG 7 cut(s) 827, 944, 1013, 1154, 1220, 1232, 1250
MspI CCGG 5 cut(s) 197, 615, 1065, 1143, 1590
MspR9I CCNGG 2 cut(s) 1491, 1590
MvaI CCWGG 1 cut(s) 1491
NciI CCSGG 1 cut(s) 1590
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 1352, 1870
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 1464
NspI RCATGY 2 cut(s) 196, 599
PaqCI CACCTGC 1 cut(s) 647
PfeI GAWTC 3 cut(s) 119, 281, 650
PflFI GACNNNGTC 1 cut(s) 68
PleI GAGTC 4 cut(s) 77, 93, 103, 232
PpsI GAGTC 4 cut(s) 77, 93, 103, 232
Psp1406I AACGTT 1 cut(s) 1903
Psp6I CCWGG 1 cut(s) 1489
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 1489
PspPI GGNCC 1 cut(s) 1661
PstI CTGCAG 2 cut(s) 864, 1390
PstNI CAGNNNCTG 2 cut(s) 947, 1394
PsuI RGATCY 1 cut(s) 1352
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 4 cut(s) 827, 1013, 1154, 1220
RsaI GTAC 6 cut(s) 567, 1160, 1303, 1325, 1532, 1625
RsaNI GTAC 6 cut(s) 566, 1159, 1302, 1324, 1531, 1624
RseI CAYNNNNRTG 1 cut(s) 1857
Sau3AI GATC 2 cut(s) 1352, 1870
Sau96I GGNCC 1 cut(s) 1661
SchI GAGTC 4 cut(s) 78, 94, 104, 232
ScrFI CCNGG 2 cut(s) 1491, 1590
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 5 cut(s) 145, 234, 1449, 1471, 1825
SfcI CTRYAG 3 cut(s) 860, 1386, 1791
SinI GGWCC 1 cut(s) 1661
SmiMI CAYNNNNRTG 1 cut(s) 1857
Sse9I AATT 1 cut(s) 263
SspMI CTAG 2 cut(s) 273, 335
StyD4I CCNGG 2 cut(s) 1489, 1588
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 8 cut(s) 162, 497, 691, 1132, 1177, 1306, 1405, 1675
TaiI ACGT 4 cut(s) 519, 640, 1698, 1906
TaqI TCGA 2 cut(s) 93, 1677
TasI AATT 1 cut(s) 263
TatI WGTACW 1 cut(s) 565
TauI GCSGC 5 cut(s) 839, 893, 947, 1232, 1253
TfiI GAWTC 3 cut(s) 119, 281, 650
TscAI CASTG 7 cut(s) 502, 757, 1182, 1311, 1368, 1395, 1732
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 5 cut(s) 222, 245, 335, 566, 938
TspGWI ACGGA 6 cut(s) 53, 244, 494, 1280, 1641, 1725
TspRI CASTG 7 cut(s) 502, 757, 1182, 1311, 1368, 1395, 1732
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 1661
XapI RAATTY 1 cut(s) 263
XceI RCATGY 2 cut(s) 196, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XmiI GTMKAC 2 cut(s) 1415, 1563
XspI CTAG 2 cut(s) 273, 335
Zsp2I ATGCAT 1 cut(s) 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.