RLG00000030655

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001392
Physical Location & Seq
Reverse (-)
65151430 .. 65156320
4891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030655

Sequence Viewer

Length: 708 bp
ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGCAACCAGGTGAAAATGGAATGGTTGAGGAGAGCGAGGAAGGGTGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGTGGAGGTCATCTGAGAAGCAAGGCAGGCAGGAGGGGAGGTCATCTGTGCTGGTGGCGTTTTCCGCTGGTTTTACTGCTTTTGGGGTTCCTTTTCTTGTTTGGACGGTTGCGTTTGAGGACGATTCCTATGTGGACAGCTACGTCGGCACCATTGGAGTTGATTTTAAAATCAGGACGGTGGAGCTAGATAGGAAGACAGTGAAGCTGCAGATTGTCCTCACGAAGGTAATGGGAGAGAGAGAATTTTGGATTTCTCAATTTTCTGTTTGCGTTTTCAGCTTCATCTACACAATGAACGACCTCCTCAAGGTATCTCAAAGGAGATGCATGGATGGAAATGTCAATCTAATGCCAATCTTCAAAGAAAGAATGAGTGAAGGCGACAGCGAGCATTCTTTTGTCTTGAAGGATGATCTTGGGTATATTAGCCGCATTTGTGGGGTTATTGATAGAGGAATTGATACGATATTTGAGTTTCAGTATAACAAGTGGCTATTGAAGTTAAGCATCTTTTTGTGCAGTGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

236

Amino Acids

26.97

Weight (kDa)

5.29

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 78
AciI CCGC 2 cut(s) 240, 607
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 78, 400, 484
AgsI TTSAA 3 cut(s) 538, 583, 676
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 6 cut(s) 19, 150, 315, 361, 382, 456
AluI AGCT 6 cut(s) 19, 150, 315, 361, 382, 456
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 41, 86
AoxI GGCC 2 cut(s) 5, 31
ApeKI GCWGC 2 cut(s) 16, 382
ApoI RAATTY 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 28, 369
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 41, 86
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 383
BisI GCNGC 3 cut(s) 17, 383, 607
BlsI GCNGC 3 cut(s) 18, 384, 608
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 264, 325
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 491, 693
BpiI GAAGAC 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 400, 484
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 514, 592
BseLI CCNNNNNNNGG 3 cut(s) 78, 400, 484
BseMII CTCAG 2 cut(s) 36, 180
BseRI GAGGAG 4 cut(s) 78, 104, 143, 470
BseXI GCAGC 2 cut(s) 28, 369
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 7, 33
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 78, 400, 484
BsmAI GTCTC 2 cut(s) 41, 86
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 7, 33
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 589
BspACI CCGC 2 cut(s) 240, 607
BspANI GGCC 2 cut(s) 7, 33
BspCNI CTCAG 2 cut(s) 37, 181
BspLI GGNNCC 2 cut(s) 264, 325
BspMAI CTGCAG 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 589
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 283, 355, 376
BstC8I GCNNGC 2 cut(s) 203, 566
BstDEI CTNAG 2 cut(s) 45, 189
BstENI CCTNNNNNAGG 2 cut(s) 398, 482
BstF5I GGATG 2 cut(s) 514, 592
BstKTI GATC 1 cut(s) 592
BstMAI GTCTC 2 cut(s) 41, 86
BstMBI GATC 1 cut(s) 589
BstMWI GCNNNNNNNGC 7 cut(s) 13, 22, 169, 202, 239, 321, 453
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 28, 369
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 7, 33
BtsCI GGATG 2 cut(s) 514, 592
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 381, 703
Cac8I GCNNGC 2 cut(s) 203, 566
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 106
CviAII CATG 2 cut(s) 96, 505
DdeI CTNAG 2 cut(s) 45, 189
DpnI GATC 1 cut(s) 591
DpnII GATC 1 cut(s) 589
DraI TTTAAA 1 cut(s) 343
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 2 cut(s) 398, 482
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 99, 508
FaiI YATR 5 cut(s) 97, 306, 506, 600, 660
FatI CATG 2 cut(s) 95, 504
Fnu4HI GCNGC 3 cut(s) 17, 383, 607
FokI GGATG 2 cut(s) 521, 599
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 17, 383, 607
FspBI CTAG 1 cut(s) 362
GluI GCNGC 3 cut(s) 17, 383, 607
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 2 cut(s) 7, 33
HgaI GACGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 99, 508
HinfI GANTC 2 cut(s) 68, 299
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 46, 190
Hpy188III TCNNGA 3 cut(s) 349, 397, 580
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 134, 394, 548, 577
HpyCH4III ACNGT 3 cut(s) 283, 355, 376
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 158, 385, 504, 696
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 22, 169, 202, 239, 321, 453
HpyF3I CTNAG 2 cut(s) 45, 189
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 99, 508
Kzo9I GATC 1 cut(s) 589
LmnI GCTCC 3 cut(s) 82, 147, 358
LpnPI CCDG 9 cut(s) 64, 93, 120, 158, 187, 191, 212, 228, 334
Lsp1109I GCAGC 2 cut(s) 28, 369
LweI GCATC 2 cut(s) 491, 693
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 318
MalI GATC 1 cut(s) 591
MboI GATC 1 cut(s) 589
MboII GAAGA 2 cut(s) 382, 526
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 3 cut(s) 419, 434, 633
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 2 cut(s) 342, 680
MspA1I CMGCKG 2 cut(s) 19, 242
MspR9I CCNGG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 7 cut(s) 13, 22, 169, 202, 239, 321, 453
NdeII GATC 1 cut(s) 589
NlaIII CATG 2 cut(s) 99, 508
NlaIV GGNNCC 2 cut(s) 264, 325
NsiI ATGCAT 1 cut(s) 506
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 68, 299
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 3 cut(s) 18, 384, 608
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 264, 325
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 19
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 342, 680
SatI GCNGC 3 cut(s) 17, 383, 607
Sau3AI GATC 1 cut(s) 589
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 152
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 2 cut(s) 491, 693
SfcI CTRYAG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 419, 434, 633
SsiI CCGC 2 cut(s) 240, 607
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 3 cut(s) 283, 355, 376
TaiI ACGT 1 cut(s) 321
TasI AATT 3 cut(s) 419, 434, 633
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 2 cut(s) 68, 299
Tru1I TTAA 2 cut(s) 342, 680
Tru9I TTAA 2 cut(s) 342, 680
TscAI CASTG 2 cut(s) 381, 703
TseI GCWGC 2 cut(s) 16, 382
TspDTI ATGAA 2 cut(s) 448, 485
TspRI CASTG 2 cut(s) 381, 703
Van91I CCANNNNNTGG 1 cut(s) 78
XagI CCTNNNNNAGG 2 cut(s) 398, 482
XapI RAATTY 1 cut(s) 419
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.