Rh6AG141000

Seed biotin-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001392
Physical Location & Seq
Forward (+)
21850580 .. 21853435
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG141000.1

Sequence Viewer

Length: 258 bp
ATGGCTGTTGGGATGAAGAGTCGATATGTTTTTAGGTCCAACGCTAGCTCCACCCACCAATTCATCAAGAAGGATTTTGTGGGTGTTCAGAAAGCGGAGAGTTCAGTGAAAGAGCCCGGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAAGACAAGGCCGCTGTGGCAGGTTGGACTGCAGCGCACGACGGAACTGAGGCACCAGTGGAGGGAACCAAAGCAGCTGCAAGATTATTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.06

Weight (kDa)

9.57

Isoelectric Point (pI)

24.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 3 cut(s) 95, 152, 174
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 2 cut(s) 48, 239
AluI AGCT 2 cut(s) 48, 239
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 194, 236, 239
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 117
AsuNHI GCTAGC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 206, 226, 248
BcnI CCSGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 174, 195, 237, 240
BlsI GCNGC 4 cut(s) 175, 196, 238, 241
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 216, 229
BmrFI CCNGG 1 cut(s) 117
BmtI GCTAGC 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 206, 226, 248
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 117
BspACI CCGC 3 cut(s) 95, 152, 174
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 216, 229
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 206, 226, 248
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 111, 225
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 5, 48, 115, 173, 239
CviKI_1 RGCY 5 cut(s) 5, 48, 115, 173, 239
DdeI CTNAG 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 27, 138, 147
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 174, 195, 237, 240
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 4 cut(s) 174, 195, 237, 240
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 198
GluI GCNGC 4 cut(s) 174, 195, 237, 240
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 133, 194, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 130, 168, 231
Lsp1109I GCAGC 3 cut(s) 206, 226, 248
MaeI CTAG 1 cut(s) 45
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 63, 167
MnlI CCTC 2 cut(s) 205, 217
MspA1I CMGCKG 2 cut(s) 176, 239
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 117
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 216, 229
PkrI GCNGC 4 cut(s) 175, 196, 238, 241
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 216, 229
PspPI GGNCC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 239
SatI GCNGC 4 cut(s) 174, 195, 237, 240
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 38, 50, 187, 241
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 9 cut(s) 57, 79, 128, 129, 158, 181, 195, 212, 230
SinI GGWCC 1 cut(s) 36
Sse9I AATT 1 cut(s) 59
SsiI CCGC 3 cut(s) 95, 152, 174
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 59
TauI GCSGC 1 cut(s) 176
TscAI CASTG 2 cut(s) 111, 225
TseI GCWGC 3 cut(s) 194, 236, 239
TspDTI ATGAA 2 cut(s) 29, 52
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 2 cut(s) 111, 225
VpaK11BI GGWCC 1 cut(s) 36
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.