Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Forward (+)

15968106 .. 15968669

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAATATATAAAGTTTAACACAAGCAAGACTGCTGTGGAAAAAACAACTCCACTGGCAGAGAAAACCAAAGACGTTGCGGTTTCTGCAGGTCAGACCACTCTGCATTACCTGGAAGAAAGGGCGGCGAAGGCTAAGGACATGACCTTGGAGGGCGGGAAGACTACGGCGACATATAGTGGGAAGACTGCGGCGGCGTGTGCAGGTGATGTGGCGATGGACTTAAAGGACAAGGTGACTGTGGTCGGTTGGACTGCAGTGCAGTACACCACTGAAGCAGCAGTGGAGGAGACTATAAAGACGGCGAAGGTTGTCATGGGGGCGGCTGAAGATGCGGAGCATAAAGTTGTGGATATTGTTTCAAAGCCTATGGGTATGGCTAAAGATGCCGCTGTGGTGGCAGGGGAGAAGGCTGAGGAGTACACTGCCAGGAAGAGGGAGGAGGCACAGAAAGAACCGGAGGCCAAGAGAATGGCAATTAAACAAAATAAGCAGCAGGTATTAATATGTCAAGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

174

Amino Acids

18.74

Weight (kDa)

7.67

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	3 cut(s)	80, 194, 487
AciI	CCGC	8 cut(s)	80, 125, 156, 191, 194, 323, 335, 390
AcuI	CTGAAG	2 cut(s)	294, 348
AfaI	GTAC	3 cut(s)	266, 422, 518
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	2 cut(s)	111, 428
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	278, 493
AseI	ATTAAT	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	218, 247
BbsI	GAAGAC	2 cut(s)	167, 191
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	290, 505
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	2 cut(s)	183, 318
BciT130I	CCWGG	2 cut(s)	113, 430
BcoDI	GTCTC	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	87, 255
BfuAI	ACCTGC	3 cut(s)	80, 194, 487
BisI	GCNGC	7 cut(s)	126, 192, 195, 279, 324, 390, 494
BlsI	GCNGC	7 cut(s)	127, 193, 196, 280, 325, 391, 495
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	2 cut(s)	113, 430
BmrFI	CCNGG	2 cut(s)	113, 430
BmsI	GCATC	2 cut(s)	322, 376
BoxI	GACNNNNGTC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	167, 191
Bpu10I	CCTNAGC	2 cut(s)	135, 414
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	113, 430
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	3 cut(s)	302, 431, 455
BseXI	GCAGC	2 cut(s)	290, 505
BsgI	GTGCAG	2 cut(s)	222, 281
BshFI	GGCC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	464
BspACI	CCGC	8 cut(s)	80, 125, 156, 191, 194, 323, 335, 390
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	406
BspMAI	CTGCAG	2 cut(s)	91, 259
BspMI	ACCTGC	3 cut(s)	80, 194, 487
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	113, 430
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	135, 414
BstMAI	GTCTC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 131, 200, 332, 386, 398
BstNI	CCWGG	2 cut(s)	113, 430
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	111, 428
BstSFI	CTRYAG	2 cut(s)	87, 255
BstV1I	GCAGC	2 cut(s)	290, 505
BstV2I	GAAGAC	2 cut(s)	167, 191
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	464
BtgZI	GCGATG	1 cut(s)	230
BtsI	GCAGTG	3 cut(s)	264, 288, 423
BtsIMutI	CAGTG	5 cut(s)	53, 264, 270, 288, 423
BveI	ACCTGC	3 cut(s)	80, 194, 487
Csp6I	GTAC	3 cut(s)	265, 421, 517
CviAII	CATG	2 cut(s)	142, 316
CviJI	RGCY	6 cut(s)	134, 326, 367, 380, 413, 464
CviKI_1	RGCY	6 cut(s)	134, 326, 367, 380, 413, 464
CviQI	GTAC	3 cut(s)	265, 421, 517
DdeI	CTNAG	2 cut(s)	135, 414
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	294, 348
EcoRII	CCWGG	2 cut(s)	111, 428
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	145, 319
FatI	CATG	2 cut(s)	141, 315
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	7 cut(s)	126, 192, 195, 279, 324, 390, 494
Fsp4HI	GCNGC	7 cut(s)	126, 192, 195, 279, 324, 390, 494
GluI	GCNGC	7 cut(s)	126, 192, 195, 279, 324, 390, 494
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	2 cut(s)	145, 319
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	218, 247
Hpy166II	GTNNAC	2 cut(s)	267, 423
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	267, 423
HpyAV	CCTTC	3 cut(s)	124, 301, 403
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	89, 106, 203, 257, 262
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 131, 200, 332, 386, 398
HpyF3I	CTNAG	2 cut(s)	135, 414
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	145, 319
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	290, 505
LweI	GCATC	2 cut(s)	322, 376
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	128, 172, 196, 341, 445
MluCI	AATT	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	7 cut(s)	145, 280, 409, 429, 433, 436, 454
MseI	TTAA	4 cut(s)	18, 224, 480, 503
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	113, 430
MvaI	CCWGG	2 cut(s)	113, 430
MwoI	GCNNNNNNNGC	6 cut(s)	86, 131, 200, 332, 386, 398
NlaIII	CATG	2 cut(s)	145, 319
NmuCI	GTSAC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	127, 193, 196, 280, 325, 391, 495
PshAI	GACNNNNGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	503
Psp6I	CCWGG	2 cut(s)	111, 428
PspGI	CCWGG	2 cut(s)	111, 428
PstI	CTGCAG	2 cut(s)	91, 259
RsaI	GTAC	3 cut(s)	266, 422, 518
RsaNI	GTAC	3 cut(s)	265, 421, 517
SaqAI	TTAA	4 cut(s)	18, 224, 480, 503
SatI	GCNGC	7 cut(s)	126, 192, 195, 279, 324, 390, 494
ScaI	AGTACT	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	113, 430
SetI	ASST	8 cut(s)	78, 94, 114, 149, 208, 237, 312, 501
SfaNI	GCATC	2 cut(s)	322, 376
SfcI	CTRYAG	2 cut(s)	87, 255
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	8 cut(s)	80, 125, 156, 191, 194, 323, 335, 390
StyD4I	CCNGG	2 cut(s)	111, 428
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	78
TasI	AATT	1 cut(s)	477
TatI	WGTACW	3 cut(s)	264, 420, 516
TauI	GCSGC	5 cut(s)	128, 194, 197, 326, 392
Tru1I	TTAA	4 cut(s)	18, 224, 480, 503
Tru9I	TTAA	4 cut(s)	18, 224, 480, 503
TscAI	CASTG	5 cut(s)	60, 264, 277, 288, 430
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	278, 493
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	60, 264, 277, 288, 430
VspI	ATTAAT	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.