Rh4DG087300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001392
Physical Location & Seq
Reverse (-)
13335926 .. 13346778
10853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG087300.1

Sequence Viewer

Length: 342 bp
ATGGTTCATAGGCTCAAGAACGGGTGCAGTGGCCGTGGTCTCATCGACAGCAGTCGACTTAGCTTCATTAAGCTAATCAAAGTTAAATTCCTCTACCTCCTGCAGCACGGAATTATCCGAGTCTATTTTACTGACCTTCTCTTTCGATCTCTCAAGTTGGGTTCAATTCGGTGGGTTCAATTCGCTCTCTCAGTATCTTCTCTCTTCCATCAGTGGTTCAATTCGGTCCTCACGAAGGGAACGGGAGAGAGAGAATTTTGGATTTCTCAATTTTCCGTTTGCGTTTTCAGCTTCATATGCACAATGAACGACCTCCTCAAGGCTCAATGTTTAAGTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.09

Weight (kDa)

9.97

Isoelectric Point (pI)

17.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 2 cut(s) 86, 254
AfiI CCNNNNNNNGG 2 cut(s) 235, 319
AgsI TTSAA 3 cut(s) 165, 179, 220
AluBI AGCT 3 cut(s) 63, 73, 291
AluI AGCT 3 cut(s) 63, 73, 291
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 86, 254
AspS9I GGNCC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 101, 338
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BoxI GACNNNNGTC 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 137, 302
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 319
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 235, 319
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 235, 319
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 146
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 59, 190
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 2 cut(s) 233, 317
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 288, 297
BstPAI GACNNNNGTC 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 101, 338
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 218
Cfr13I GGNCC 1 cut(s) 226
CviJI RGCY 6 cut(s) 13, 33, 63, 73, 291, 323
CviKI_1 RGCY 6 cut(s) 13, 33, 63, 73, 291, 323
DdeI CTNAG 2 cut(s) 59, 190
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 226
EcoNI CCTNNNNNAGG 2 cut(s) 233, 317
FaiI YATR 3 cut(s) 9, 296, 298
FauNDI CATATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 16, 232
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 146, 229
HpyCH4V TGCA 3 cut(s) 27, 103, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 297
HpyF3I CTNAG 2 cut(s) 59, 190
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 115
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 189, 196
MluCI AATT 7 cut(s) 86, 111, 165, 179, 220, 254, 269
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 5 cut(s) 101, 107, 239, 323, 326
MseI TTAA 3 cut(s) 69, 84, 332
MwoI GCNNNNNNNGC 2 cut(s) 288, 297
NdeI CATATG 1 cut(s) 296
NdeII GATC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 105
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 69, 84, 332
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 129
SetI ASST 6 cut(s) 65, 75, 99, 138, 293, 315
SfcI CTRYAG 2 cut(s) 101, 338
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 3 cut(s) 14, 152, 317
SmoI CTYRAG 3 cut(s) 14, 152, 317
Sse9I AATT 7 cut(s) 86, 111, 165, 179, 220, 254, 269
TaqI TCGA 3 cut(s) 45, 55, 145
TaqII GACCGA 1 cut(s) 214
TasI AATT 7 cut(s) 86, 111, 165, 179, 220, 254, 269
Tru1I TTAA 3 cut(s) 69, 84, 332
Tru9I TTAA 3 cut(s) 69, 84, 332
TscAI CASTG 2 cut(s) 34, 218
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 55, 283, 320
TspGWI ACGGA 2 cut(s) 123, 265
TspRI CASTG 2 cut(s) 34, 218
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 2 cut(s) 233, 317
XapI RAATTY 2 cut(s) 86, 254
XmiI GTMKAC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.