Rmu_sc0002372.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002372.1
OG0001392
Physical Location & Seq
Reverse (-)
67019 .. 69239
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002372.1_g000013.1.cds

Sequence Viewer

Length: 426 bp
ctggtggtgatattcaaggtggtgagggagaaggagaggaagaagaggtgggcggcggaggttaaggccaaggcggagcccaaggtggtggaggaggagaaggacaaggagggggagaagagtggaaaaagagcaaaagatactctatcaagtgcagggaagaaaatggtggagtacatggtgccattagcagagaaaactaaagacatggccgtgtctgcaagtaagaccactctgcattatgctggtcatgttgcggtagatttcaaggacaaggcgactgtggcagattggactgcagcgcactatgcaactgaggcagcagtggagggaaccaaagcagctgcaagattagttgccggagcagcagggtatgccggtcgtaaggctgtggatattgtgtccaagccttttgagtgctgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.27

Weight (kDa)

9.34

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 4 cut(s) 53, 56, 74, 257
AcoI YGGCCR 1 cut(s) 210
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 16, 268
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AoxI GGCC 2 cut(s) 66, 210
ApeKI GCWGC 6 cut(s) 299, 320, 341, 344, 365, 420
AspLEI GCGC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 19, 34
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 6 cut(s) 311, 331, 332, 353, 377, 407
BceAI ACGGC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 7 cut(s) 54, 300, 321, 342, 345, 366, 421
BlsI GCNGC 7 cut(s) 55, 301, 322, 343, 346, 367, 422
BmiI GGNNCC 3 cut(s) 78, 183, 334
BsaJI CCNNGG 2 cut(s) 69, 81
Bse118I RCCGGY 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 69, 81
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 107, 110
BseXI GCAGC 6 cut(s) 311, 331, 332, 353, 377, 407
BsgI GTGCAG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 68, 212
BshNI GGYRCC 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 360, 378
BsnI GGCC 2 cut(s) 68, 212
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 4 cut(s) 53, 56, 74, 257
BspANI GGCC 2 cut(s) 68, 212
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 78, 183, 334
BspMAI CTGCAG 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 69, 81
BssT1I CCWWGG 2 cut(s) 69, 81
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 38, 113
BstAPI GCANNNNNTGC 1 cut(s) 374
BstDEI CTNAG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 6 cut(s) 218, 284, 308, 317, 365, 374
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 6 cut(s) 311, 331, 332, 353, 377, 407
BstXI CCANNNNNNTGG 1 cut(s) 88
BsuRI GGCC 2 cut(s) 68, 212
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 377
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 178, 208, 251
CviJI RGCY 6 cut(s) 68, 79, 212, 344, 389, 409
CviKI_1 RGCY 6 cut(s) 68, 79, 212, 344, 389, 409
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 38, 113
EarI CTCTTC 2 cut(s) 38, 113
EciI GGCGGA 2 cut(s) 71, 89
Eco130I CCWWGG 2 cut(s) 69, 81
Eco24I GRGCYC 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 69, 81
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 2 cut(s) 69, 81
FaeI CATG 3 cut(s) 181, 211, 254
FaiI YATR 6 cut(s) 179, 209, 243, 252, 309, 375
FatI CATG 3 cut(s) 177, 207, 250
Fnu4HI GCNGC 7 cut(s) 54, 300, 321, 342, 345, 366, 421
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 7 cut(s) 54, 300, 321, 342, 345, 366, 421
GlaI GCGC 1 cut(s) 303
GluI GCNGC 7 cut(s) 54, 300, 321, 342, 345, 366, 421
HaeIII GGCC 2 cut(s) 68, 212
HapII CCGG 2 cut(s) 360, 378
HhaI GCGC 1 cut(s) 304
Hin1II CATG 3 cut(s) 181, 211, 254
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HpaII CCGG 2 cut(s) 360, 378
HphI GGTGA 2 cut(s) 19, 34
HpyAV CCTTC 2 cut(s) 25, 94
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 6 cut(s) 155, 221, 238, 299, 311, 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 284, 308, 317, 365, 374
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 3 cut(s) 181, 211, 254
HspAI GCGC 1 cut(s) 302
LmnI GCTCC 2 cut(s) 76, 362
LpnPI CCDG 5 cut(s) 141, 231, 354, 373, 391
Lsp1109I GCAGC 6 cut(s) 311, 331, 332, 353, 377, 407
MboII GAAGA 4 cut(s) 52, 55, 130, 172
MhlI GDGCHC 1 cut(s) 81
MnlI CCTC 9 cut(s) 18, 30, 39, 52, 85, 88, 103, 310, 322
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 360, 378
MwoI GCNNNNNNNGC 6 cut(s) 218, 284, 308, 317, 365, 374
NlaIII CATG 3 cut(s) 181, 211, 254
NlaIV GGNNCC 3 cut(s) 78, 183, 334
PkrI GCNGC 7 cut(s) 55, 301, 322, 343, 346, 367, 422
PspN4I GGNNCC 3 cut(s) 78, 183, 334
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 7 cut(s) 54, 300, 321, 342, 345, 366, 421
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 21, 50, 63, 87, 346
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 212
SsiI CCGC 4 cut(s) 53, 56, 74, 257
StyI CCWWGG 2 cut(s) 69, 81
TaaI ACNGT 1 cut(s) 283
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 330
TseI GCWGC 6 cut(s) 299, 320, 341, 344, 365, 420
TspRI CASTG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.