NEMP family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1569 |
| Acc36I | ACCTGC | 2 cut(s) | 998, 1608 |
| Acc65I | GGTACC | 1 cut(s) | 1374 |
| AccB1I | GGYRCC | 3 cut(s) | 538, 901, 1374 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1251 |
| AccBSI | CCGCTC | 1 cut(s) | 1345 |
| AccII | CGCG | 2 cut(s) | 1364, 1529 |
| AciI | CCGC | 6 cut(s) | 1306, 1343, 1372, 1527, 1529, 1621 |
| AclWI | GGATC | 3 cut(s) | 390, 403, 709 |
| AcoI | YGGCCR | 1 cut(s) | 930 |
| AcsI | RAATTY | 4 cut(s) | 160, 280, 482, 669 |
| AcuI | CTGAAG | 1 cut(s) | 1215 |
| AfaI | GTAC | 4 cut(s) | 606, 744, 896, 1376 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 625, 1251 |
| AgsI | TTSAA | 3 cut(s) | 476, 792, 988 |
| AjnI | CCWGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| AleI | CACNNNNGTG | 1 cut(s) | 193 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 427, 459, 1198, 1230 |
| AluBI | AGCT | 9 cut(s) | 288, 637, 717, 754, 1064, 1130, 1193, 1448, 1559 |
| AluI | AGCT | 9 cut(s) | 288, 637, 717, 754, 1064, 1130, 1193, 1448, 1559 |
| Alw21I | GWGCWC | 1 cut(s) | 1450 |
| Alw26I | GTCTC | 2 cut(s) | 1214, 1259 |
| AlwI | GGATC | 3 cut(s) | 390, 403, 709 |
| AoxI | GGCC | 4 cut(s) | 299, 930, 1179, 1531 |
| ApeKI | GCWGC | 8 cut(s) | 29, 1019, 1040, 1061, 1064, 1085, 1106, 1190 |
| ApoI | RAATTY | 4 cut(s) | 160, 280, 482, 669 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 328 |
| Asp718I | GGTACC | 1 cut(s) | 1374 |
| AspLEI | GCGC | 3 cut(s) | 417, 1024, 1364 |
| AspS9I | GGNCC | 3 cut(s) | 384, 1206, 1531 |
| AsuHPI | GGTGA | 6 cut(s) | 128, 271, 277, 396, 1126, 1133 |
| AvaII | GGWCC | 2 cut(s) | 384, 1206 |
| BaeGI | GKGCMC | 1 cut(s) | 353 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1366, 1399 |
| BamHI | GGATCC | 1 cut(s) | 395 |
| BanI | GGYRCC | 3 cut(s) | 538, 901, 1374 |
| BanII | GRGCYC | 2 cut(s) | 801, 1450 |
| BauI | CACGAG | 1 cut(s) | 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 1450 |
| BbvCI | CCTCAGC | 2 cut(s) | 713, 1131 |
| BbvI | GCAGC | 8 cut(s) | 16, 1031, 1051, 1052, 1073, 1093, 1097, 1202 |
| BceAI | ACGGC | 2 cut(s) | 314, 917 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 130, 164 |
| BciT130I | CCWGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| BciVI | GTATCC | 1 cut(s) | 288 |
| BclI | TGATCA | 1 cut(s) | 1576 |
| BcoDI | GTCTC | 2 cut(s) | 1214, 1259 |
| BfaI | CTAG | 4 cut(s) | 107, 500, 1332, 1586 |
| BfmI | CTRYAG | 1 cut(s) | 1017 |
| BfoI | RGCGCY | 1 cut(s) | 418 |
| BfuAI | ACCTGC | 2 cut(s) | 998, 1608 |
| BfuI | GTATCC | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 1519 |
| BisI | GCNGC | 8 cut(s) | 30, 1020, 1041, 1062, 1065, 1086, 1107, 1191 |
| BlpI | GCTNAGC | 2 cut(s) | 174, 1555 |
| BlsI | GCNGC | 8 cut(s) | 31, 1021, 1042, 1063, 1066, 1087, 1108, 1192 |
| BmcAI | AGTACT | 1 cut(s) | 744 |
| Bme1390I | CCNGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| Bme18I | GGWCC | 2 cut(s) | 384, 1206 |
| BmgT120I | GGNCC | 3 cut(s) | 384, 1206, 1531 |
| BmiI | GGNNCC | 6 cut(s) | 385, 397, 540, 903, 1054, 1376 |
| BmrFI | CCNGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| BmsI | GCATC | 1 cut(s) | 1621 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1279, 1311 |
| BpmI | CTGGAG | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 2 cut(s) | 713, 1131 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 174, 1555 |
| BpuEI | CTTGAG | 1 cut(s) | 1426 |
| BsaJI | CCNNGG | 7 cut(s) | 378, 724, 725, 801, 1209, 1378, 1527 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 625, 1251 |
| Bse118I | RCCGGY | 2 cut(s) | 16, 1097 |
| Bse1I | ACTGG | 4 cut(s) | 361, 1123, 1280, 1422 |
| BseBI | CCWGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| BseDI | CCNNGG | 7 cut(s) | 378, 724, 725, 801, 1209, 1378, 1527 |
| BseGI | GGATG | 4 cut(s) | 446, 636, 720, 1416 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 625, 1251 |
| BseNI | ACTGG | 4 cut(s) | 361, 1123, 1280, 1422 |
| BseRI | GAGGAG | 6 cut(s) | 701, 827, 830, 1148, 1251, 1277 |
| BseSI | GKGCMC | 1 cut(s) | 353 |
| BseXI | GCAGC | 8 cut(s) | 16, 1031, 1051, 1052, 1073, 1093, 1097, 1202 |
| BseYI | CCCAGC | 2 cut(s) | 1251, 1385 |
| BsgI | GTGCAG | 2 cut(s) | 894, 1586 |
| Bsh1236I | CGCG | 2 cut(s) | 1364, 1529 |
| BshFI | GGCC | 4 cut(s) | 301, 932, 1181, 1533 |
| BshNI | GGYRCC | 3 cut(s) | 538, 901, 1374 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1450 |
| BsiSI | CCGG | 3 cut(s) | 17, 1080, 1098 |
| BslFI | GGGAC | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 625, 1251 |
| BsmAI | GTCTC | 2 cut(s) | 1214, 1259 |
| BsmFI | GGGAC | 1 cut(s) | 454 |
| BsmI | GAATGC | 2 cut(s) | 36, 127 |
| BsnI | GGCC | 4 cut(s) | 301, 932, 1181, 1533 |
| Bsp1286I | GDGCHC | 3 cut(s) | 353, 801, 1450 |
| Bsp143I | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 174, 1555 |
| BspACI | CCGC | 6 cut(s) | 1306, 1343, 1372, 1527, 1529, 1621 |
| BspANI | GGCC | 4 cut(s) | 301, 932, 1181, 1533 |
| BspFNI | CGCG | 2 cut(s) | 1364, 1529 |
| BspLI | GGNNCC | 6 cut(s) | 385, 397, 540, 903, 1054, 1376 |
| BspMAI | CTGCAG | 1 cut(s) | 1021 |
| BspMI | ACCTGC | 2 cut(s) | 998, 1608 |
| BspPI | GGATC | 3 cut(s) | 390, 403, 709 |
| BspT107I | GGYRCC | 3 cut(s) | 538, 901, 1374 |
| BsrBI | CCGCTC | 1 cut(s) | 1345 |
| BsrFI | RCCGGY | 2 cut(s) | 16, 1097 |
| BsrI | ACTGG | 4 cut(s) | 361, 1123, 1280, 1422 |
| BssAI | RCCGGY | 2 cut(s) | 16, 1097 |
| BssECI | CCNNGG | 7 cut(s) | 378, 724, 725, 801, 1209, 1378, 1527 |
| BssMI | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| BssSI | CACGAG | 1 cut(s) | 333 |
| BssT1I | CCWWGG | 3 cut(s) | 378, 801, 1209 |
| Bst2BI | CACGAG | 1 cut(s) | 333 |
| Bst2UI | CCWGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| Bst4CI | ACNGT | 5 cut(s) | 192, 259, 439, 458, 1003 |
| Bst6I | CTCTTC | 7 cut(s) | 73, 196, 650, 762, 833, 1152, 1160 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1094, 1600 |
| BstC8I | GCNNGC | 3 cut(s) | 34, 1501, 1531 |
| BstDSI | CCRYGG | 1 cut(s) | 1527 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 623 |
| BstF5I | GGATG | 4 cut(s) | 446, 636, 720, 1416 |
| BstFNI | CGCG | 2 cut(s) | 1364, 1529 |
| BstH2I | RGCGCY | 1 cut(s) | 418 |
| BstHHI | GCGC | 3 cut(s) | 417, 1024, 1364 |
| BstKTI | GATC | 5 cut(s) | 398, 615, 704, 1522, 1579 |
| BstMAI | GTCTC | 2 cut(s) | 1214, 1259 |
| BstMBI | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| BstNI | CCWGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| BstNSI | RCATGY | 1 cut(s) | 1631 |
| BstSCI | CCNGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| BstSFI | CTRYAG | 1 cut(s) | 1017 |
| BstSLI | GKGCMC | 1 cut(s) | 353 |
| BstUI | CGCG | 2 cut(s) | 1364, 1529 |
| BstV1I | GCAGC | 8 cut(s) | 16, 1031, 1051, 1052, 1073, 1093, 1097, 1202 |
| BstX2I | RGATCY | 3 cut(s) | 395, 701, 1519 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 808 |
| BstYI | RGATCY | 3 cut(s) | 395, 701, 1519 |
| BsuI | GTATCC | 1 cut(s) | 288 |
| BsuRI | GGCC | 4 cut(s) | 301, 932, 1181, 1533 |
| BtgI | CCRYGG | 1 cut(s) | 1527 |
| BtsCI | GGATG | 4 cut(s) | 446, 636, 720, 1416 |
| BtsI | GCAGTG | 2 cut(s) | 583, 1050 |
| BtsIMutI | CAGTG | 5 cut(s) | 188, 368, 444, 583, 1050 |
| BveI | ACCTGC | 2 cut(s) | 998, 1608 |
| Cac8I | GCNNGC | 3 cut(s) | 34, 1501, 1531 |
| CfoI | GCGC | 3 cut(s) | 417, 1024, 1364 |
| Cfr10I | RCCGGY | 2 cut(s) | 16, 1097 |
| Cfr13I | GGNCC | 3 cut(s) | 384, 1206, 1531 |
| Cfr42I | CCGCGG | 1 cut(s) | 1530 |
| Csp6I | GTAC | 4 cut(s) | 605, 743, 895, 1375 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 576, 611 |
| CviAII | CATG | 8 cut(s) | 209, 400, 898, 928, 971, 1103, 1269, 1628 |
| CviQI | GTAC | 4 cut(s) | 605, 743, 895, 1375 |
| DpnI | GATC | 5 cut(s) | 397, 614, 703, 1521, 1578 |
| DpnII | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1569 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1569 |
| EaeI | YGGCCR | 1 cut(s) | 930 |
| Eam1104I | CTCTTC | 7 cut(s) | 73, 196, 650, 762, 833, 1152, 1160 |
| EarI | CTCTTC | 7 cut(s) | 73, 196, 650, 762, 833, 1152, 1160 |
| Ecl136II | GAGCTC | 1 cut(s) | 1448 |
| Eco130I | CCWWGG | 3 cut(s) | 378, 801, 1209 |
| Eco24I | GRGCYC | 2 cut(s) | 801, 1450 |
| Eco32I | GATATC | 1 cut(s) | 273 |
| Eco47I | GGWCC | 2 cut(s) | 384, 1206 |
| Eco53kI | GAGCTC | 1 cut(s) | 1448 |
| Eco57I | CTGAAG | 1 cut(s) | 1215 |
| EcoICRI | GAGCTC | 1 cut(s) | 1448 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 623 |
| EcoO109I | RGGNCCY | 1 cut(s) | 384 |
| EcoRII | CCWGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| EcoRV | GATATC | 1 cut(s) | 273 |
| EcoT14I | CCWWGG | 3 cut(s) | 378, 801, 1209 |
| EcoT38I | GRGCYC | 2 cut(s) | 801, 1450 |
| ErhI | CCWWGG | 3 cut(s) | 378, 801, 1209 |
| FaeI | CATG | 8 cut(s) | 212, 403, 901, 931, 974, 1106, 1272, 1631 |
| FaqI | GGGAC | 1 cut(s) | 454 |
| FatI | CATG | 8 cut(s) | 208, 399, 897, 927, 970, 1102, 1268, 1627 |
| FauI | CCCGC | 1 cut(s) | 1522 |
| FauNDI | CATATG | 1 cut(s) | 1302 |
| FbaI | TGATCA | 1 cut(s) | 1576 |
| Fnu4HI | GCNGC | 8 cut(s) | 30, 1020, 1041, 1062, 1065, 1086, 1107, 1191 |
| FokI | GGATG | 4 cut(s) | 433, 643, 707, 1423 |
| FriOI | GRGCYC | 2 cut(s) | 801, 1450 |
| Fsp4HI | GCNGC | 8 cut(s) | 30, 1020, 1041, 1062, 1065, 1086, 1107, 1191 |
| FspBI | CTAG | 4 cut(s) | 107, 500, 1332, 1586 |
| GlaI | GCGC | 3 cut(s) | 416, 1023, 1363 |
| GluI | GCNGC | 8 cut(s) | 30, 1020, 1041, 1062, 1065, 1086, 1107, 1191 |
| GsaI | CCCAGC | 2 cut(s) | 1255, 1389 |
| GsuI | CTGGAG | 1 cut(s) | 260 |
| HaeII | RGCGCY | 1 cut(s) | 418 |
| HaeIII | GGCC | 4 cut(s) | 301, 932, 1181, 1533 |
| HapII | CCGG | 3 cut(s) | 17, 1080, 1098 |
| HhaI | GCGC | 3 cut(s) | 417, 1024, 1364 |
| Hin1II | CATG | 8 cut(s) | 212, 403, 901, 931, 974, 1106, 1272, 1631 |
| Hin6I | GCGC | 3 cut(s) | 415, 1022, 1362 |
| HinP1I | GCGC | 3 cut(s) | 415, 1022, 1362 |
| HindIII | AAGCTT | 2 cut(s) | 635, 752 |
| HinfI | GANTC | 3 cut(s) | 86, 1241, 1292 |
| HpaII | CCGG | 3 cut(s) | 17, 1080, 1098 |
| HphI | GGTGA | 6 cut(s) | 128, 271, 277, 396, 1126, 1133 |
| Hpy166II | GTNNAC | 1 cut(s) | 1140 |
| Hpy188III | TCNNGA | 5 cut(s) | 239, 393, 526, 1574, 1580 |
| Hpy8I | GTNNAC | 1 cut(s) | 1140 |
| Hpy99I | CGWCG | 1 cut(s) | 1620 |
| HpyAV | CCTTC | 5 cut(s) | 256, 552, 814, 1147, 1432 |
| HpyCH4III | ACNGT | 5 cut(s) | 192, 259, 439, 458, 1003 |
| Hsp92II | CATG | 8 cut(s) | 212, 403, 901, 931, 974, 1106, 1272, 1631 |
| HspAI | GCGC | 3 cut(s) | 415, 1022, 1362 |
| KpnI | GGTACC | 1 cut(s) | 1378 |
| Ksp22I | TGATCA | 1 cut(s) | 1576 |
| KspI | CCGCGG | 1 cut(s) | 1530 |
| Kzo9I | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| LmnI | GCTCC | 4 cut(s) | 1082, 1255, 1359, 1445 |
| Lsp1109I | GCAGC | 8 cut(s) | 16, 1031, 1051, 1052, 1073, 1093, 1097, 1202 |
| LweI | GCATC | 1 cut(s) | 1621 |
| MaeI | CTAG | 4 cut(s) | 107, 500, 1332, 1586 |
| MaeIII | GTNAC | 2 cut(s) | 402, 1114 |
| MalI | GATC | 5 cut(s) | 397, 614, 703, 1521, 1578 |
| MbiI | CCGCTC | 1 cut(s) | 1345 |
| MboI | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| MflI | RGATCY | 3 cut(s) | 395, 701, 1519 |
| MhlI | GDGCHC | 3 cut(s) | 353, 801, 1450 |
| MluCI | AATT | 9 cut(s) | 134, 160, 280, 482, 553, 669, 759, 1348, 1421 |
| MmeI | TCCRAC | 3 cut(s) | 632, 992, 1561 |
| MroXI | GAANNNNTTC | 1 cut(s) | 328 |
| MseI | TTAA | 1 cut(s) | 231 |
| MslI | CAYNNNNRTG | 3 cut(s) | 193, 213, 932 |
| MspA1I | CMGCKG | 3 cut(s) | 1064, 1193, 1529 |
| MspI | CCGG | 3 cut(s) | 17, 1080, 1098 |
| MspR9I | CCNGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| Mva1269I | GAATGC | 2 cut(s) | 36, 127 |
| MvaI | CCWGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| MvnI | CGCG | 2 cut(s) | 1364, 1529 |
| NdeI | CATATG | 1 cut(s) | 1302 |
| NdeII | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| NlaIII | CATG | 8 cut(s) | 212, 403, 901, 931, 974, 1106, 1272, 1631 |
| NlaIV | GGNNCC | 6 cut(s) | 385, 397, 540, 903, 1054, 1376 |
| NmuCI | GTSAC | 2 cut(s) | 402, 1114 |
| NspI | RCATGY | 1 cut(s) | 1631 |
| OliI | CACNNNNGTG | 1 cut(s) | 193 |
| PasI | CCCWGGG | 1 cut(s) | 725 |
| PctI | GAATGC | 2 cut(s) | 36, 127 |
| PdmI | GAANNNNTTC | 1 cut(s) | 328 |
| PfeI | GAWTC | 3 cut(s) | 86, 1241, 1292 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1251 |
| PkrI | GCNGC | 8 cut(s) | 31, 1021, 1042, 1063, 1066, 1087, 1108, 1192 |
| PpuMI | RGGWCCY | 1 cut(s) | 384 |
| Psp124BI | GAGCTC | 1 cut(s) | 1450 |
| Psp5II | RGGWCCY | 1 cut(s) | 384 |
| Psp6I | CCWGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| PspFI | CCCAGC | 2 cut(s) | 1251, 1385 |
| PspGI | CCWGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| PspN4I | GGNNCC | 6 cut(s) | 385, 397, 540, 903, 1054, 1376 |
| PspPI | GGNCC | 3 cut(s) | 384, 1206, 1531 |
| PspPPI | RGGWCCY | 1 cut(s) | 384 |
| PstI | CTGCAG | 1 cut(s) | 1021 |
| PsuI | RGATCY | 3 cut(s) | 395, 701, 1519 |
| PvuII | CAGCTG | 2 cut(s) | 1064, 1193 |
| RsaI | GTAC | 4 cut(s) | 606, 744, 896, 1376 |
| RsaNI | GTAC | 4 cut(s) | 605, 743, 895, 1375 |
| RseI | CAYNNNNRTG | 3 cut(s) | 193, 213, 932 |
| SacI | GAGCTC | 1 cut(s) | 1450 |
| SacII | CCGCGG | 1 cut(s) | 1530 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 8 cut(s) | 30, 1020, 1041, 1062, 1065, 1086, 1107, 1191 |
| Sau3AI | GATC | 5 cut(s) | 395, 612, 701, 1519, 1576 |
| Sau96I | GGNCC | 3 cut(s) | 384, 1206, 1531 |
| ScaI | AGTACT | 1 cut(s) | 744 |
| ScrFI | CCNGG | 5 cut(s) | 168, 180, 388, 726, 1379 |
| SduI | GDGCHC | 3 cut(s) | 353, 801, 1450 |
| SfaNI | GCATC | 1 cut(s) | 1621 |
| SfcI | CTRYAG | 1 cut(s) | 1017 |
| Sfr303I | CCGCGG | 1 cut(s) | 1530 |
| SgrBI | CCGCGG | 1 cut(s) | 1530 |
| SinI | GGWCC | 2 cut(s) | 384, 1206 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 193, 213, 932 |
| SmlI | CTYRAG | 1 cut(s) | 1405 |
| SmoI | CTYRAG | 1 cut(s) | 1405 |
| Sse9I | AATT | 9 cut(s) | 134, 160, 280, 482, 553, 669, 759, 1348, 1421 |
| SsiI | CCGC | 6 cut(s) | 1306, 1343, 1372, 1527, 1529, 1621 |
| SspMI | CTAG | 4 cut(s) | 107, 500, 1332, 1586 |
| SstI | GAGCTC | 1 cut(s) | 1450 |
| StyD4I | CCNGG | 5 cut(s) | 166, 178, 386, 724, 1377 |
| StyI | CCWWGG | 3 cut(s) | 378, 801, 1209 |
| TaaI | ACNGT | 5 cut(s) | 192, 259, 439, 458, 1003 |
| TaqI | TCGA | 4 cut(s) | 140, 284, 1561, 1615 |
| TasI | AATT | 9 cut(s) | 134, 160, 280, 482, 553, 669, 759, 1348, 1421 |
| TatI | WGTACW | 3 cut(s) | 604, 742, 894 |
| TfiI | GAWTC | 3 cut(s) | 86, 1241, 1292 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TscAI | CASTG | 5 cut(s) | 195, 368, 444, 583, 1050 |
| TseFI | GTSAC | 2 cut(s) | 402, 1114 |
| TseI | GCWGC | 8 cut(s) | 29, 1019, 1040, 1061, 1064, 1085, 1106, 1190 |
| Tsp45I | GTSAC | 2 cut(s) | 402, 1114 |
| TspDTI | ATGAA | 6 cut(s) | 197, 435, 546, 647, 672, 1427 |
| TspGWI | ACGGA | 1 cut(s) | 448 |
| TspRI | CASTG | 5 cut(s) | 195, 368, 444, 583, 1050 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1251 |
| VpaK11BI | GGWCC | 2 cut(s) | 384, 1206 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 623 |
| XapI | RAATTY | 4 cut(s) | 160, 280, 482, 669 |
| XceI | RCATGY | 1 cut(s) | 1631 |
| XmnI | GAANNNNTTC | 1 cut(s) | 328 |
| XspI | CTAG | 4 cut(s) | 107, 500, 1332, 1586 |
| ZrmI | AGTACT | 1 cut(s) | 744 |