Rh2DG208400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001392
Physical Location & Seq
Reverse (-)
19607438 .. 19608138
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG208400.1

Sequence Viewer

Length: 234 bp
ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGACCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCGGAGTGGCAGACCAACTGAAAAAACTAGCCAGAAACCGCTCAATTACAGAGGGAGCGCGAGAGGGCGGTACCTGGGTGCTGGGAACAATCGGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.66

Weight (kDa)

11.87

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 190
AciI CCGC 3 cut(s) 132, 169, 198
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 1 cut(s) 203
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 40, 85
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 16
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 40, 85
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BsaJI CCNNGG 2 cut(s) 35, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 204
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 35, 136
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 77, 103
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 2 cut(s) 77, 211
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 40, 85
BsnI GGCC 1 cut(s) 7
BspACI CCGC 3 cut(s) 132, 169, 198
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 36, 135
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 35, 204
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 44, 122
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 40, 85
BstMWI GCNNNNNNNGC 2 cut(s) 13, 22
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 7
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 95
CviJI RGCY 3 cut(s) 7, 19, 161
CviKI_1 RGCY 3 cut(s) 7, 19, 161
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 44, 122
Eco130I CCWWGG 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 128, 130
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 2 cut(s) 81, 215
HaeIII GGCC 1 cut(s) 7
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 67, 118
Hpy188I TCNGA 2 cut(s) 45, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 22
HpyF3I CTNAG 2 cut(s) 44, 122
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 81, 185
LpnPI CCDG 7 cut(s) 63, 119, 175, 190, 197, 211, 217
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 158
MbiI CCGCTC 1 cut(s) 171
MluCI AATT 1 cut(s) 174
MnlI CCTC 5 cut(s) 55, 81, 107, 175, 187
MspA1I CMGCKG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 13, 22
NdeI CATATG 1 cut(s) 128
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 67, 118
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 2 cut(s) 77, 211
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 205
SetI ASST 2 cut(s) 21, 206
SinI GGWCC 1 cut(s) 32
Sse9I AATT 1 cut(s) 174
SsiI CCGC 3 cut(s) 132, 169, 198
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 35
TasI AATT 1 cut(s) 174
TfiI GAWTC 2 cut(s) 67, 118
TseI GCWGC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 32
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.