Rroxscaffold_3G00226510

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001392
Physical Location & Seq
Forward (+)
10054082 .. 10072457
18376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226510.1

Sequence Viewer

Length: 411 bp
ATGATGAACATCGACCATCATGAAAGTCTACTTGAGCAAAGGGTGTTTAAGGTAATCCCATTTTTTGGTGAAGCCTTTGACACCAAAACATGGCCTGACTTTATAGTAGTAGAGATAGGTGGCCCAAGGCGTGTTCGAAGAAGAGATCGTTCACTCCAAAGAAAGAAAAATCTCATCCGATCATGGAGGTCTATGATAAACCGAAGCTTTATTCGTGCCCACCTCAGCCACACAATCAACTTGAATAACCGCCATGGCACTCACCTCCTACTACTGCACAGGGGTTCCGAGACTACTCAAGGAGGAGAAACCAAAAGTTGGGAGCAAGAAGAGACATGGATGAAGCCGGTTGAAAGGGTATCTCGGCATATGCAGAGAGAAGGTGGCAGACCAAGTGAAAAAACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

136

Amino Acids

16.18

Weight (kDa)

11.0

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 65, 90, 318
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 250
AfiI CCNNNNNNNGG 3 cut(s) 65, 90, 318
AgsI TTSAA 2 cut(s) 244, 353
AluBI AGCT 2 cut(s) 207, 408
AluI AGCT 2 cut(s) 207, 408
Alw26I GTCTC 2 cut(s) 284, 326
AoxI GGCC 2 cut(s) 92, 121
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 80, 254
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 220
BbvCI CCTCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 284, 326
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 2 cut(s) 53, 282
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 125, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 90, 318
Bse118I RCCGGY 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 125, 253
BseGI GGATG 2 cut(s) 174, 345
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 65, 90, 318
BseMII CTCAG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 2 cut(s) 94, 123
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 65, 90, 318
BsmAI GTCTC 2 cut(s) 284, 326
BsnI GGCC 2 cut(s) 94, 123
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 145, 179
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 250
BspANI GGCC 2 cut(s) 94, 123
BspCNI CTCAG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 125, 253
BssMI GATC 2 cut(s) 145, 179
BssT1I CCWWGG 2 cut(s) 125, 253
Bst6I CTCTTC 2 cut(s) 136, 324
BstBI TTCGAA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 174, 345
BstKTI GATC 2 cut(s) 148, 182
BstMAI GTCTC 2 cut(s) 284, 326
BstMBI GATC 2 cut(s) 145, 179
BstSLI GKGCMC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 94, 123
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 174, 345
CciI TCATGA 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 5 cut(s) 20, 90, 183, 254, 336
CviJI RGCY 7 cut(s) 74, 94, 123, 207, 228, 346, 408
CviKI_1 RGCY 7 cut(s) 74, 94, 123, 207, 228, 346, 408
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 147, 181
DpnII GATC 2 cut(s) 145, 179
Eam1104I CTCTTC 2 cut(s) 136, 324
EarI CTCTTC 2 cut(s) 136, 324
Eco130I CCWWGG 2 cut(s) 125, 253
EcoT14I CCWWGG 2 cut(s) 125, 253
ErhI CCWWGG 2 cut(s) 125, 253
FaeI CATG 5 cut(s) 23, 93, 186, 257, 339
FaiI YATR 9 cut(s) 21, 91, 104, 184, 194, 255, 337, 369, 371
FatI CATG 5 cut(s) 19, 89, 182, 253, 335
FauNDI CATATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 28
FokI GGATG 2 cut(s) 161, 352
HaeIII GGCC 2 cut(s) 94, 123
HapII CCGG 1 cut(s) 347
Hin1II CATG 5 cut(s) 23, 93, 186, 257, 339
HindIII AAGCTT 1 cut(s) 205
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 80, 254
Hpy166II GTNNAC 2 cut(s) 29, 152
Hpy188I TCNGA 2 cut(s) 179, 289
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 29, 152
HpyAV CCTTC 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 277, 373
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 5 cut(s) 23, 93, 186, 257, 339
Kzo9I GATC 2 cut(s) 145, 179
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 3 cut(s) 108, 265, 360
MalI GATC 2 cut(s) 147, 181
MboI GATC 2 cut(s) 145, 179
MboII GAAGA 3 cut(s) 150, 153, 341
MhlI GDGCHC 1 cut(s) 220
MnlI CCTC 4 cut(s) 180, 233, 275, 296
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 369
NdeII GATC 2 cut(s) 145, 179
NlaIII CATG 5 cut(s) 23, 93, 186, 257, 339
NlaIV GGNNCC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 343
NspV TTCGAA 1 cut(s) 136
PagI TCATGA 1 cut(s) 19
PflMI CCANNNNNTGG 3 cut(s) 65, 90, 318
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 2 cut(s) 145, 179
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 220
SetI ASST 8 cut(s) 54, 121, 191, 209, 225, 267, 385, 410
SfuI TTCGAA 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 32, 297
SmoI CTYRAG 2 cut(s) 32, 297
SsiI CCGC 1 cut(s) 250
StyI CCWWGG 2 cut(s) 125, 253
TaqI TCGA 2 cut(s) 12, 136
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 20, 36, 356
Van91I CCANNNNNTGG 3 cut(s) 65, 90, 318
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.