Rh1BG033000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001392
Physical Location & Seq
Reverse (-)
4557045 .. 4557512
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG033000.1

Sequence Viewer

Length: 234 bp
ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAACTGAAAAAACCAACCAGAAACTGCACAGTTAGAGAGGGAGCGCGAGAGGGCAGTACCTGGGTGCTGGGAACAATCGGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.81

Weight (kDa)

11.81

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AccII CGCG 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 40, 85
AlwNI CAGNNNCTG 2 cut(s) 168, 204
AoxI GGCC 2 cut(s) 5, 31
ApeKI GCWGC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 40, 85
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BsaJI CCNNGG 2 cut(s) 35, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 204
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 35, 136
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 77, 103
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 2 cut(s) 77, 211
BsgI GTGCAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 7, 33
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 40, 85
BsnI GGCC 2 cut(s) 7, 33
BspANI GGCC 2 cut(s) 7, 33
BspCNI CTCAG 2 cut(s) 36, 135
BspFNI CGCG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 35, 204
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 44, 122
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 40, 85
BstMWI GCNNNNNNNGC 2 cut(s) 13, 22
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 7, 33
CaiI CAGNNNCTG 2 cut(s) 168, 204
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 95
CviJI RGCY 3 cut(s) 7, 19, 33
CviKI_1 RGCY 3 cut(s) 7, 19, 33
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 44, 122
Eco130I CCWWGG 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 128, 130
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 2 cut(s) 81, 215
HaeIII GGCC 2 cut(s) 7, 33
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 67, 118
Hpy188I TCNGA 2 cut(s) 45, 113
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 132, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 22
HpyF3I CTNAG 2 cut(s) 44, 122
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 81, 185
LpnPI CCDG 7 cut(s) 63, 119, 175, 190, 197, 211, 217
Lsp1109I GCAGC 1 cut(s) 28
MnlI CCTC 5 cut(s) 55, 81, 107, 175, 187
MspA1I CMGCKG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 13, 22
NdeI CATATG 1 cut(s) 128
NlaIII CATG 1 cut(s) 98
PfeI GAWTC 2 cut(s) 67, 118
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 2 cut(s) 77, 211
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 1 cut(s) 32
PstNI CAGNNNCTG 2 cut(s) 168, 204
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 205
SetI ASST 2 cut(s) 21, 206
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 175
TfiI GAWTC 2 cut(s) 67, 118
TseI GCWGC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.