Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Reverse (-)

32973833 .. 32983547

Gene Structure 9715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTAATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGAAGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAATTGAAAAAACCAACCAGAAACCGCACAGTTAGAGAGGGAGCGCAAGAGGGCGGTACCTGGGTGCCGGGGGAACAATCGGCAGGACTTGAGGGTGAAAATGGAATGGTTGAGGAGAGCGAGGAAGGGTGGAGCTCAAATGCACAGCAAGGAGGGCAAGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGTGGAGGTCATCTGAGAAGCAAGGCAGGCAGGAGGGGAGGTCTTTACTTGATGAGCTAACATTTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

10.09

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	200, 208
AccB7I	CCANNNNNTGG	1 cut(s)	77
AciI	CCGC	2 cut(s)	169, 198
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	4 cut(s)	19, 279, 312, 394
AluI	AGCT	4 cut(s)	19, 279, 312, 394
Alw21I	GWGCWC	2 cut(s)	281, 314
Alw26I	GTCTC	2 cut(s)	40, 85
AoxI	GGCC	2 cut(s)	5, 31
ApeKI	GCWGC	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BanI	GGYRCC	2 cut(s)	200, 208
BanII	GRGCYC	2 cut(s)	281, 314
Bbv12I	GWGCWC	2 cut(s)	281, 314
BbvI	GCAGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	40, 85
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	205, 213
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	202, 210
BmrFI	CCNGG	2 cut(s)	205, 213
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	35, 204, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	35, 204, 212
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	35, 136, 342
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	77, 103, 272
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	7, 33
BshNI	GGYRCC	2 cut(s)	200, 208
BsiHKAI	GWGCWC	2 cut(s)	281, 314
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	40, 85
BsnI	GGCC	2 cut(s)	7, 33
Bsp1286I	GDGCHC	2 cut(s)	281, 314
BspACI	CCGC	2 cut(s)	169, 198
BspANI	GGCC	2 cut(s)	7, 33
BspCNI	CTCAG	3 cut(s)	36, 135, 343
BspHI	TCATGA	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	202, 210
BspT107I	GGYRCC	2 cut(s)	200, 208
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	35, 204, 212
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	44, 122, 351
BstHHI	GCGC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	40, 85
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 22, 298, 331, 364
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	203, 211
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	7, 33
Cac8I	GCNNGC	1 cut(s)	365
CciI	TCATGA	1 cut(s)	407
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	2 cut(s)	95, 408
CviJI	RGCY	6 cut(s)	7, 19, 33, 279, 312, 394
CviKI_1	RGCY	6 cut(s)	7, 19, 33, 279, 312, 394
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	44, 122, 351
Ecl136II	GAGCTC	2 cut(s)	279, 312
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	281, 314
Eco53kI	GAGCTC	2 cut(s)	279, 312
Eco57I	CTGAAG	1 cut(s)	41
EcoICRI	GAGCTC	2 cut(s)	279, 312
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	2 cut(s)	281, 314
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	98, 411
FaiI	YATR	4 cut(s)	96, 128, 130, 409
FatI	CATG	2 cut(s)	94, 407
FauNDI	CATATG	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	281, 314
Fsp4HI	GCNGC	1 cut(s)	17
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	7, 33
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	98, 411
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	67, 118
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	45, 113, 352
Hpy188III	TCNNGA	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	3 cut(s)	132, 287, 320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 22, 298, 331, 364
HpyF3I	CTNAG	3 cut(s)	44, 122, 351
Hsp92II	CATG	2 cut(s)	98, 411
HspAI	GCGC	1 cut(s)	188
KpnI	GGTACC	1 cut(s)	204
LmnI	GCTCC	4 cut(s)	81, 185, 276, 309
Lsp1109I	GCAGC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	281, 314
MluCI	AATT	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	205, 213
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	13, 22, 298, 331, 364
NciI	CCSGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	128
NlaIII	CATG	2 cut(s)	98, 411
NlaIV	GGNNCC	2 cut(s)	202, 210
PagI	TCATGA	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	67, 118
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	281, 314
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	202, 210
PspPI	GGNCC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SacI	GAGCTC	2 cut(s)	281, 314
SatI	GCNGC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	205, 213
SduI	GDGCHC	2 cut(s)	281, 314
SetI	ASST	7 cut(s)	21, 206, 281, 314, 347, 380, 396
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	169, 198
SstI	GAGCTC	2 cut(s)	281, 314
StyD4I	CCNGG	2 cut(s)	203, 211
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	175
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	67, 118
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	393
Van91I	CCANNNNNTGG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.