Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Reverse (-)

20313329 .. 20315497

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCGGTCGTAAGGCTGTGGATATTATGTCCAAGCCTTTTGAGTGCTGCTAAAGATGCTGCTGTGGTGACTGGTGAGAAAGCTGAGGAGTTCACTGCTCGGAAGAAGGAAGAGGCGAAGAGAGAATATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGACCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCGGAGTGGCAGACCAACTGAAAAAACTAGCCAGAAACCGCTCAATTACAGAGGGAGCGCGAGAGGGCGGTACCTAGGTGCTGGGAACAATCGGCAGGACTTGAGGTGTGATACCGGGAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

9.25

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	327
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	298
AccII	CGCG	1 cut(s)	317
AciI	CCGC	3 cut(s)	259, 296, 325
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
AluBI	AGCT	3 cut(s)	83, 146, 378
AluI	AGCT	3 cut(s)	83, 146, 378
Alw26I	GTCTC	2 cut(s)	167, 212
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	47, 59, 143
Asp718I	GGTACC	1 cut(s)	327
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	79, 86
AvaII	GGWCC	1 cut(s)	159
AvrII	CCTAGG	1 cut(s)	331
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	34, 46, 155
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	167, 212
BfaI	CTAG	2 cut(s)	285, 332
BisI	GCNGC	3 cut(s)	48, 60, 144
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	3 cut(s)	49, 61, 145
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	162, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	76, 233
BseDI	CCNNGG	2 cut(s)	162, 331
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	75, 162, 263
BseNI	ACTGG	2 cut(s)	76, 233
BseRI	GAGGAG	3 cut(s)	101, 204, 230
BseXI	GCAGC	3 cut(s)	34, 46, 155
BseYI	CCCAGC	2 cut(s)	204, 338
Bsh1236I	CGCG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	167, 212
BsnI	GGCC	1 cut(s)	134
BspACI	CCGC	3 cut(s)	259, 296, 325
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	3 cut(s)	76, 163, 262
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	76, 233
BssECI	CCNNGG	2 cut(s)	162, 331
BssT1I	CCWWGG	2 cut(s)	162, 331
Bst6I	CTCTTC	2 cut(s)	105, 113
BstDEI	CTNAG	3 cut(s)	84, 171, 249
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	317
BstMAI	GTCTC	2 cut(s)	167, 212
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 140, 149
BstSCI	CCNGG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	34, 46, 155
BsuRI	GGCC	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	7 cut(s)	16, 36, 83, 134, 146, 288, 378
CviKI_1	RGCY	7 cut(s)	16, 36, 83, 134, 146, 288, 378
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	84, 171, 249
Eam1104I	CTCTTC	2 cut(s)	105, 113
EarI	CTCTTC	2 cut(s)	105, 113
Eco130I	CCWWGG	2 cut(s)	162, 331
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	162, 331
ErhI	CCWWGG	2 cut(s)	162, 331
FaeI	CATG	1 cut(s)	225
FaiI	YATR	5 cut(s)	28, 129, 223, 255, 257
FatI	CATG	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	48, 60, 144
Fsp4HI	GCNGC	3 cut(s)	48, 60, 144
FspBI	CTAG	2 cut(s)	285, 332
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	48, 60, 144
GsaI	CCCAGC	2 cut(s)	208, 342
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	194, 245
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	2 cut(s)	79, 86
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	3 cut(s)	102, 172, 240
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 140, 149
HpyF3I	CTNAG	3 cut(s)	84, 171, 249
Hsp92II	CATG	1 cut(s)	225
HspAI	GCGC	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	331
LmnI	GCTCC	3 cut(s)	208, 312, 375
LpnPI	CCDG	6 cut(s)	57, 190, 246, 302, 324, 338
Lsp1109I	GCAGC	3 cut(s)	34, 46, 155
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	285, 332
MaeIII	GTNAC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	115, 122, 130
MluCI	AATT	1 cut(s)	301
MnlI	CCTC	9 cut(s)	79, 106, 124, 182, 208, 234, 302, 314, 354
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	56, 140, 149
NciI	CCSGG	1 cut(s)	373
NdeI	CATATG	1 cut(s)	255
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	194, 245
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	49, 61, 145
PspFI	CCCAGC	2 cut(s)	204, 338
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SatI	GCNGC	3 cut(s)	48, 60, 144
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	6 cut(s)	85, 148, 333, 337, 365, 380
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	3 cut(s)	259, 296, 325
SspMI	CTAG	2 cut(s)	285, 332
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	162, 331
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	194, 245
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	47, 59, 143
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	2 cut(s)	285, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.