Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Reverse (-)

18712042 .. 18713421

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTTAATATAATCATTCCAGTGCTTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGACTGAAGGCAAAAGATACTCTATCAAGTGCAGGGAAGAAAATGGTGGAGTACATGGTGCCATTAGCAGAGAAAACTAAAGACATGGCCGTGTCTGCAAGTAAGACCACTCTGCATTATGCTGGTCATGTTGCGGTAGATTTCAAGGACAAGGCGACTGTGGCAGATTGGACTGCAGCGCACTATGCAACTGAGGCAGCAGTGGAGGGAACCAAAGCAGCTGCAAGATTAGTTGCCGGAGCAGCAGGGTATGCCGGTCGTAAGGCTGTGGATATTGTGTCCAAGCCTTTTGAGTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

128

Amino Acids

13.62

Weight (kDa)

9.44

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	98, 110
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	6 cut(s)	260, 281, 302, 305, 326, 381
AspLEI	GCGC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	142
BbvI	GCAGC	6 cut(s)	272, 292, 293, 314, 338, 368
BceAI	ACGGC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	6 cut(s)	261, 282, 303, 306, 327, 382
BlsI	GCNGC	6 cut(s)	262, 283, 304, 307, 328, 383
BmiI	GGNNCC	2 cut(s)	144, 295
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	6 cut(s)	272, 292, 293, 314, 338, 368
BsgI	GTGCAG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	321, 339
BsnI	GGCC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	144, 295
BspMAI	CTGCAG	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	74, 244
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 245, 269, 278, 326, 335
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	6 cut(s)	272, 292, 293, 314, 338, 368
BsuRI	GGCC	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	27, 291
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	139, 169, 212
CviJI	RGCY	4 cut(s)	173, 305, 350, 370
CviKI_1	RGCY	4 cut(s)	173, 305, 350, 370
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	98, 110
FaeI	CATG	3 cut(s)	142, 172, 215
FaiI	YATR	8 cut(s)	11, 57, 140, 170, 204, 213, 270, 336
FatI	CATG	3 cut(s)	138, 168, 211
Fnu4HI	GCNGC	6 cut(s)	261, 282, 303, 306, 327, 382
Fsp4HI	GCNGC	6 cut(s)	261, 282, 303, 306, 327, 382
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	261, 282, 303, 306, 327, 382
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	321, 339
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	142, 172, 215
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	321, 339
Hpy188I	TCNGA	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	74, 244
HpyCH4V	TGCA	6 cut(s)	116, 182, 199, 260, 272, 308
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 245, 269, 278, 326, 335
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	142, 172, 215
HspAI	GCGC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	7 cut(s)	15, 33, 102, 192, 315, 334, 352
Lsp1109I	GCAGC	6 cut(s)	272, 292, 293, 314, 338, 368
MboII	GAAGA	2 cut(s)	79, 133
MnlI	CCTC	3 cut(s)	52, 271, 283
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	20, 173
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	2 cut(s)	321, 339
MwoI	GCNNNNNNNGC	6 cut(s)	179, 245, 269, 278, 326, 335
NlaIII	CATG	3 cut(s)	142, 172, 215
NlaIV	GGNNCC	2 cut(s)	144, 295
PkrI	GCNGC	6 cut(s)	262, 283, 304, 307, 328, 383
PspN4I	GGNNCC	2 cut(s)	144, 295
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	20, 173
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	6 cut(s)	261, 282, 303, 306, 327, 382
SetI	ASST	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	20, 173
SsiI	CCGC	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	74, 244
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	27, 291
TseI	GCWGC	6 cut(s)	260, 281, 302, 305, 326, 381
TspRI	CASTG	2 cut(s)	27, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.