Rh5CG062100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001392
Physical Location & Seq
Reverse (-)
4682069 .. 4682950
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG062100.1

Sequence Viewer

Length: 456 bp
ATGCTGTTCATAAAGCTGTGGATATTGTGCCCAAGCCTTTTGAGTGCTGCTAAAGATGCTGCTGTGGTGACTGGTGAGAAAGCTGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCCAATGCTGGGAGCAAGAGAGACATGGCCGAAACCAGTTCAGAGGGAATCTCATCATATGCAGAGTGGCAGACCAACTGAAAAAACTAGCCAGAAACCGCTCAGTTACAGAGGGAGTGCCAGAGGGCGGTACCTGGGGTGAAAGTGGAATGGTTGAGGAGAGCGAGGAAGGTTGGAGCTCAAATGCACAGCACGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGTGGAGGTCATACGAGAAGCAAGGCAGGCAGGGGGGGGGTGAATGCCAGAACATGATCGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.64

Weight (kDa)

6.19

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 2 cut(s) 250, 279
AcoI YGGCCR 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 3 cut(s) 159, 160, 278
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 5 cut(s) 16, 83, 101, 330, 363
AluI AGCT 5 cut(s) 16, 83, 101, 330, 363
Alw21I GWGCWC 2 cut(s) 332, 365
Alw26I GTCTC 2 cut(s) 122, 166
AoxI GGCC 3 cut(s) 87, 113, 178
ApeKI GCWGC 3 cut(s) 47, 59, 98
Asp718I GGTACC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 79, 86, 302, 440
BaeGI GKGCMC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 332, 365
Bbv12I GWGCWC 2 cut(s) 332, 365
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 34, 46, 110
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 122, 166
BfaI CTAG 1 cut(s) 239
BisI GCNGC 3 cut(s) 48, 60, 99
BlsI GCNGC 3 cut(s) 49, 61, 100
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 186, 218
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 117, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 160, 278
Bse1I ACTGG 2 cut(s) 76, 187
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 117, 285
BseLI CCNNNNNNNGG 3 cut(s) 159, 160, 278
BseMII CTCAG 3 cut(s) 75, 117, 267
BseNI ACTGG 2 cut(s) 76, 187
BseRI GAGGAG 2 cut(s) 159, 323
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 3 cut(s) 34, 46, 110
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 3 cut(s) 89, 115, 180
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 332, 365
BslI CCNNNNNNNGG 3 cut(s) 159, 160, 278
BsmAI GTCTC 2 cut(s) 122, 166
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 3 cut(s) 89, 115, 180
Bsp1286I GDGCHC 3 cut(s) 32, 332, 365
Bsp143I GATC 1 cut(s) 444
BspACI CCGC 2 cut(s) 250, 279
BspANI GGCC 3 cut(s) 89, 115, 180
BspCNI CTCAG 3 cut(s) 76, 118, 266
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 76, 187
BssECI CCNNGG 2 cut(s) 117, 285
BssMI GATC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 84, 126, 253
BstKTI GATC 1 cut(s) 447
BstMAI GTCTC 2 cut(s) 122, 166
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 6 cut(s) 56, 95, 104, 349, 382, 415
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 34, 46, 110
BsuRI GGCC 3 cut(s) 89, 115, 180
Cac8I GCNNGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 282
CviAII CATG 2 cut(s) 176, 442
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 84, 126, 253
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 178
Ecl136II GAGCTC 2 cut(s) 330, 363
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 332, 365
Eco53kI GAGCTC 2 cut(s) 330, 363
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 2 cut(s) 330, 363
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 332, 365
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 179, 445
FaiI YATR 6 cut(s) 11, 177, 209, 211, 400, 443
FatI CATG 2 cut(s) 175, 441
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 48, 60, 99
FriOI GRGCYC 2 cut(s) 332, 365
Fsp4HI GCNGC 3 cut(s) 48, 60, 99
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 48, 60, 99
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 3 cut(s) 89, 115, 180
Hin1II CATG 2 cut(s) 179, 445
HinfI GANTC 2 cut(s) 149, 199
HphI GGTGA 4 cut(s) 79, 86, 302, 440
Hpy188I TCNGA 2 cut(s) 127, 194
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 213, 338, 371
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 95, 104, 349, 382, 415
HpyF3I CTNAG 3 cut(s) 84, 126, 253
Hsp92II CATG 2 cut(s) 179, 445
KpnI GGTACC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 3 cut(s) 163, 327, 360
Lsp1109I GCAGC 3 cut(s) 34, 46, 110
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 67, 256
MalI GATC 1 cut(s) 446
MbiI CCGCTC 1 cut(s) 252
MboI GATC 1 cut(s) 444
MhlI GDGCHC 3 cut(s) 32, 332, 365
MmeI TCCRAC 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 6 cut(s) 56, 95, 104, 349, 382, 415
NdeI CATATG 1 cut(s) 209
NdeII GATC 1 cut(s) 444
NlaIII CATG 2 cut(s) 179, 445
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 67
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 149, 199
PkrI GCNGC 3 cut(s) 49, 61, 100
Psp124BI GAGCTC 2 cut(s) 332, 365
Psp6I CCWGG 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SacI GAGCTC 2 cut(s) 332, 365
SatI GCNGC 3 cut(s) 48, 60, 99
Sau3AI GATC 1 cut(s) 444
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 3 cut(s) 32, 332, 365
SetI ASST 8 cut(s) 18, 85, 103, 287, 325, 332, 365, 398
SfaNI GCATC 1 cut(s) 46
SsiI CCGC 2 cut(s) 250, 279
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 2 cut(s) 332, 365
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 117
TfiI GAWTC 2 cut(s) 149, 199
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 47, 59, 98
Tsp45I GTSAC 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 360
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.