Rh6AG141100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001392
Physical Location & Seq
Forward (+)
21853575 .. 21854056
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG141100.1

Sequence Viewer

Length: 234 bp
ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAACTGAAAAAACCAACCAGAAACCGCACAGTTAGAGAGGGAGCGCAAGAGGGCGGTACCTGGGTGCCGGGAACAATCGGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.79

Weight (kDa)

11.94

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 200, 208
AccB7I CCANNNNNTGG 1 cut(s) 77
AciI CCGC 2 cut(s) 169, 198
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 40, 85
AoxI GGCC 2 cut(s) 5, 31
ApeKI GCWGC 1 cut(s) 16
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 2 cut(s) 200, 208
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 40, 85
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 205, 213
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 202, 210
BmrFI CCNGG 2 cut(s) 205, 213
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 35, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 204
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 35, 136
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 77, 103
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 7, 33
BshNI GGYRCC 2 cut(s) 200, 208
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 40, 85
BsnI GGCC 2 cut(s) 7, 33
BspACI CCGC 2 cut(s) 169, 198
BspANI GGCC 2 cut(s) 7, 33
BspCNI CTCAG 2 cut(s) 36, 135
BspLI GGNNCC 2 cut(s) 202, 210
BspT107I GGYRCC 2 cut(s) 200, 208
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 35, 204
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 44, 122
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 40, 85
BstMWI GCNNNNNNNGC 2 cut(s) 13, 22
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 203, 211
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 7, 33
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 95
CviJI RGCY 3 cut(s) 7, 19, 33
CviKI_1 RGCY 3 cut(s) 7, 19, 33
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 44, 122
Eco130I CCWWGG 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 128, 130
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 7, 33
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 67, 118
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 45, 113
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 22
HpyF3I CTNAG 2 cut(s) 44, 122
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 81, 185
LpnPI CCDG 7 cut(s) 63, 119, 175, 190, 211, 217, 225
Lsp1109I GCAGC 1 cut(s) 28
MnlI CCTC 5 cut(s) 55, 81, 107, 175, 187
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 205, 213
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 13, 22
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 128
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 202, 210
PfeI GAWTC 2 cut(s) 67, 118
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 202, 210
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 205, 213
SetI ASST 2 cut(s) 21, 206
SsiI CCGC 2 cut(s) 169, 198
StyD4I CCNGG 2 cut(s) 203, 211
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 175
TfiI GAWTC 2 cut(s) 67, 118
TseI GCWGC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.