RchiOBHm_Chr6g0287441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001392
Physical Location & Seq
Reverse (-)
50848921 .. 50849283
363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25785

Sequence Viewer

Length: 357 bp
ATGCTCCAAACCCAAATTCTTCTCAGATCTGCTCCAAACCCAAATTCCTCCGCCCCCCAAAGCCGCCTAACCACCACCATCCAAATTCCAAAGTCAGGGTTTATCCGTATTGATAAGCAATTAGTATACAAAATAATCAGTTTATTGCTTGATGTGAACAAGGGTTCTGAGACTACTCAAGGAGGAGAATCCAAAAGCCGGGAGCAAGAAGAGAGATGGATGAAACCAGTTGAAAAGGAATCTCAACATATGCAGAGAGAAGGTGGCAGACCAAGTGAAAAAACCAGCCAAGAACCATTTAATTACAAAGGGAGGGAGCACGAGAGGGGTACTGGGTCTTTAATGATCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.48

Weight (kDa)

9.52

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 51, 64
AcsI RAATTY 3 cut(s) 15, 43, 84
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 95, 198
AgsI TTSAA 1 cut(s) 233
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 32, 60
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 164
ApoI RAATTY 3 cut(s) 15, 43, 84
AsuC2I CCSGG 1 cut(s) 200
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 2 cut(s) 86, 210
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 164
BglII AGATCT 1 cut(s) 26
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 198
Bse1I ACTGG 2 cut(s) 227, 337
BseGI GGATG 2 cut(s) 78, 225
BseLI CCNNNNNNNGG 2 cut(s) 95, 198
BseMII CTCAG 2 cut(s) 37, 159
BseNI ACTGG 2 cut(s) 227, 337
BseRI GAGGAG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 95, 198
BsmAI GTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 26, 345
BspACI CCGC 2 cut(s) 51, 64
BspCNI CTCAG 2 cut(s) 36, 160
BsrI ACTGG 2 cut(s) 227, 337
BssMI GATC 2 cut(s) 26, 345
BssNAI GTATAC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 23, 168
BstF5I GGATG 2 cut(s) 78, 225
BstKTI GATC 2 cut(s) 29, 348
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 26, 345
BstSCI CCNGG 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 127
BtsCI GGATG 2 cut(s) 78, 225
Csp6I GTAC 1 cut(s) 330
CviJI RGCY 3 cut(s) 63, 198, 288
CviKI_1 RGCY 3 cut(s) 63, 198, 288
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 2 cut(s) 23, 168
DpnI GATC 2 cut(s) 28, 347
DpnII GATC 2 cut(s) 26, 345
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 40
FaiI YATR 3 cut(s) 127, 249, 251
FauNDI CATATG 1 cut(s) 249
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 65, 232
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HapII CCGG 1 cut(s) 199
HinfI GANTC 2 cut(s) 188, 239
HpaII CCGG 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 127, 157
Hpy188I TCNGA 2 cut(s) 26, 169
Hpy8I GTNNAC 2 cut(s) 127, 157
HpyAV CCTTC 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 23, 168
Kzo9I GATC 2 cut(s) 26, 345
LmnI GCTCC 4 cut(s) 9, 37, 202, 316
LpnPI CCDG 5 cut(s) 81, 212, 240, 298, 318
MalI GATC 2 cut(s) 28, 347
MboI GATC 2 cut(s) 26, 345
MboII GAAGA 2 cut(s) 11, 221
MfeI CAATTG 1 cut(s) 352
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 6 cut(s) 15, 43, 84, 119, 301, 352
MnlI CCTC 4 cut(s) 58, 176, 306, 318
MseI TTAA 2 cut(s) 300, 341
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 352
NciI CCSGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 249
NdeII GATC 2 cut(s) 26, 345
PfeI GAWTC 2 cut(s) 188, 239
PkrI GCNGC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 300, 341
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 26, 345
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 321
SetI ASST 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 6 cut(s) 15, 43, 84, 119, 301, 352
SsiI CCGC 2 cut(s) 51, 64
StyD4I CCNGG 1 cut(s) 198
TasI AATT 6 cut(s) 15, 43, 84, 119, 301, 352
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 188, 239
Tru1I TTAA 2 cut(s) 300, 341
Tru9I TTAA 2 cut(s) 300, 341
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 95
XapI RAATTY 3 cut(s) 15, 43, 84
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.