Rorug03G0354400

BOBBER 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
43750853 .. 43754691
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0354400.1

Sequence Viewer

Length: 1152 bp
ATGATGAGGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCTGTTGATCAATTGCATTACAACCCACGACCTGTGCTCAACAAACAAAGCAAATTCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATTAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTCACCCTATATAATTCCACCCCTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGACCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCAATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATATATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCCGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCACTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATAGAAGATATCGGCGGTGCTGCAGTGTTATTTTTACCCTGTGCTGTATACAATTGGACACCACCAGAGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAATCATGGAACTTCTTCTGTGCATCTTCTGACATTTCAGATATGTTGTGTCTGATATTGAAGAGTGGGAGAACGAAGTACGATTTTTAA

Protein Analysis

383

Amino Acids

43.47

Weight (kDa)

9.46

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 980
AccI GTMKAC 1 cut(s) 963
AccII CGCG 1 cut(s) 508
AccIII TCCGGA 1 cut(s) 693
AciI CCGC 1 cut(s) 930
AclWI GGATC 3 cut(s) 846, 878, 1048
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 4 cut(s) 128, 670, 718, 893
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 4 cut(s) 745, 789, 812, 1142
AfiI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
AgsI TTSAA 6 cut(s) 133, 459, 494, 527, 1036, 1123
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 2 cut(s) 399, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 3 cut(s) 209, 821, 911
AluI AGCT 3 cut(s) 209, 821, 911
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 185, 504
AlwI GGATC 3 cut(s) 846, 878, 1048
AlwNI CAGNNNCTG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 693
AoxI GGCC 2 cut(s) 160, 846
ApeKI GCWGC 2 cut(s) 155, 935
ApoI RAATTY 4 cut(s) 128, 670, 718, 893
Asp700I GAANNNNTTC 1 cut(s) 1076
AspS9I GGNCC 3 cut(s) 9, 149, 847
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 5 cut(s) 262, 271, 469, 509, 604
AvaII GGWCC 2 cut(s) 9, 149
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 142, 922
BccI CCATC 3 cut(s) 15, 559, 883
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 401, 856
BclI TGATCA 2 cut(s) 82, 307
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 185, 504
BfaI CTAG 2 cut(s) 554, 644
BfmI CTRYAG 1 cut(s) 936
BfuAI ACCTGC 2 cut(s) 160, 980
BisI GCNGC 2 cut(s) 156, 936
BlsI GCNGC 2 cut(s) 157, 937
BmcAI AGTACT 1 cut(s) 789
Bme1390I CCNGG 3 cut(s) 401, 415, 856
Bme18I GGWCC 2 cut(s) 9, 149
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 9, 149, 847
BmrFI CCNGG 3 cut(s) 401, 415, 856
BmsI GCATC 4 cut(s) 455, 510, 819, 1094
BpiI GAAGAC 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
Bse118I RCCGGY 1 cut(s) 158
Bse3DI GCAATG 4 cut(s) 343, 414, 427, 543
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 2 cut(s) 401, 856
BseDI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BseGI GGATG 6 cut(s) 26, 36, 396, 570, 834, 1021
BseLI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BseMI GCAATG 4 cut(s) 343, 414, 427, 543
BseMII CTCAG 2 cut(s) 593, 633
BseRI GAGGAG 2 cut(s) 220, 584
BseXI GCAGC 2 cut(s) 142, 922
BseYI CCCAGC 1 cut(s) 442
BsgI GTGCAG 2 cut(s) 231, 1008
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 2 cut(s) 162, 848
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 3 cut(s) 159, 415, 694
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BsmAI GTCTC 2 cut(s) 185, 504
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 162, 848
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
Bsp68I TCGCGA 1 cut(s) 508
BspACI CCGC 1 cut(s) 930
BspANI GGCC 2 cut(s) 162, 848
BspCNI CTCAG 2 cut(s) 592, 632
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 658
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 2 cut(s) 160, 980
BspPI GGATC 3 cut(s) 846, 878, 1048
BsrDI GCAATG 4 cut(s) 343, 414, 427, 543
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BssMI GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
BssNAI GTATAC 1 cut(s) 964
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 4 cut(s) 163, 196, 586, 1011
Bst1107I GTATAC 1 cut(s) 964
Bst2UI CCWGG 2 cut(s) 401, 856
Bst4CI ACNGT 2 cut(s) 274, 331
Bst6I CTCTTC 2 cut(s) 54, 1118
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 160, 754, 1007
BstDEI CTNAG 2 cut(s) 579, 619
BstDSI CCRYGG 1 cut(s) 630
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 6 cut(s) 26, 36, 396, 570, 834, 1021
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 7 cut(s) 85, 310, 454, 643, 841, 886, 1043
BstMAI GTCTC 2 cut(s) 185, 504
BstMBI GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
BstNI CCWGG 2 cut(s) 401, 856
BstNSI RCATGY 1 cut(s) 1009
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 399, 413, 854
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 142, 922
BstV2I GAAGAC 1 cut(s) 268
BstZ17I GTATAC 1 cut(s) 964
BsuRI GGCC 2 cut(s) 162, 848
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 6 cut(s) 26, 36, 396, 570, 834, 1021
BtsI GCAGTG 2 cut(s) 237, 945
BtsIMutI CAGTG 3 cut(s) 237, 683, 945
BtuMI TCGCGA 1 cut(s) 508
BveI ACCTGC 2 cut(s) 160, 980
Cac8I GCNNGC 3 cut(s) 160, 754, 1007
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 9, 149, 847
CseI GACGC 1 cut(s) 14
Csp6I GTAC 4 cut(s) 744, 788, 811, 1141
CviAII CATG 5 cut(s) 659, 814, 1001, 1006, 1068
CviJI RGCY 8 cut(s) 162, 168, 209, 629, 821, 848, 905, 911
CviKI_1 RGCY 8 cut(s) 162, 168, 209, 629, 821, 848, 905, 911
CviQI GTAC 4 cut(s) 744, 788, 811, 1141
DdeI CTNAG 2 cut(s) 579, 619
DpnI GATC 7 cut(s) 84, 309, 453, 642, 840, 885, 1042
DpnII GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
DriI GACNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 54, 1118
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 2 cut(s) 54, 1118
Eco130I CCWWGG 4 cut(s) 163, 196, 586, 1011
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 2 cut(s) 9, 149
Eco91I GGTNACC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 399, 854
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 4 cut(s) 163, 196, 586, 1011
ErhI CCWWGG 4 cut(s) 163, 196, 586, 1011
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 5 cut(s) 662, 817, 1004, 1009, 1071
FaqI GGGAC 1 cut(s) 29
FatI CATG 5 cut(s) 658, 813, 1000, 1005, 1067
FbaI TGATCA 2 cut(s) 82, 307
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 2 cut(s) 156, 936
FokI GGATG 6 cut(s) 23, 33, 383, 577, 841, 1028
Fsp4HI GCNGC 2 cut(s) 156, 936
FspBI CTAG 2 cut(s) 554, 644
GluI GCNGC 2 cut(s) 156, 936
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 2 cut(s) 162, 848
HapII CCGG 3 cut(s) 159, 415, 694
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 5 cut(s) 662, 817, 1004, 1009, 1071
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 819, 909
HinfI GANTC 3 cut(s) 531, 617, 1064
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 3 cut(s) 159, 415, 694
HphI GGTGA 5 cut(s) 262, 271, 469, 509, 604
Hpy166II GTNNAC 3 cut(s) 391, 799, 964
Hpy188I TCNGA 8 cut(s) 149, 451, 582, 622, 717, 1093, 1102, 1116
Hpy188III TCNNGA 5 cut(s) 302, 507, 659, 694, 723
Hpy8I GTNNAC 3 cut(s) 391, 799, 964
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 559, 700
HpyCH4III ACNGT 2 cut(s) 274, 331
HpyCH4V TGCA 6 cut(s) 91, 248, 463, 938, 989, 1085
HpyF3I CTNAG 2 cut(s) 579, 619
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 5 cut(s) 662, 817, 1004, 1009, 1071
Kpn2I TCCGGA 1 cut(s) 693
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 82, 307
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 2 cut(s) 142, 922
LweI GCATC 4 cut(s) 455, 510, 819, 1094
MaeI CTAG 2 cut(s) 554, 644
MaeIII GTNAC 4 cut(s) 268, 325, 475, 867
MalI GATC 7 cut(s) 84, 309, 453, 642, 840, 885, 1042
MboI GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
MboII GAAGA 8 cut(s) 41, 64, 268, 601, 932, 1069, 1080, 1135
MfeI CAATTG 2 cut(s) 86, 967
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 611
MroI TCCGGA 1 cut(s) 693
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 1076
MseI TTAA 7 cut(s) 204, 213, 390, 434, 761, 1020, 1150
MslI CAYNNNNRTG 2 cut(s) 401, 468
MspI CCGG 3 cut(s) 159, 415, 694
MspR9I CCNGG 3 cut(s) 401, 415, 856
MunI CAATTG 2 cut(s) 86, 967
MvaI CCWGG 2 cut(s) 401, 856
MvnI CGCG 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 415
NdeII GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 662, 817, 1004, 1009, 1071
NmuCI GTSAC 3 cut(s) 268, 475, 867
NruI TCGCGA 1 cut(s) 508
NspI RCATGY 1 cut(s) 1009
PaeI GCATGC 1 cut(s) 1009
PagI TCATGA 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 1076
PfeI GAWTC 2 cut(s) 531, 1064
PkrI GCNGC 2 cut(s) 157, 937
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 399, 854
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 2 cut(s) 399, 854
PspPI GGNCC 3 cut(s) 9, 149, 847
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 449
RruI TCGCGA 1 cut(s) 508
RsaI GTAC 4 cut(s) 745, 789, 812, 1142
RsaNI GTAC 4 cut(s) 744, 788, 811, 1141
RseI CAYNNNNRTG 2 cut(s) 401, 468
SaqAI TTAA 7 cut(s) 204, 213, 390, 434, 761, 1020, 1150
SatI GCNGC 2 cut(s) 156, 936
Sau3AI GATC 7 cut(s) 82, 307, 451, 640, 838, 883, 1040
Sau96I GGNCC 3 cut(s) 9, 149, 847
ScaI AGTACT 1 cut(s) 789
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 401, 415, 856
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 4 cut(s) 455, 510, 819, 1094
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 9, 149
SmiMI CAYNNNNRTG 2 cut(s) 401, 468
SphI GCATGC 1 cut(s) 1009
SsiI CCGC 1 cut(s) 930
SspI AATATT 2 cut(s) 382, 503
SspMI CTAG 2 cut(s) 554, 644
StyD4I CCNGG 3 cut(s) 399, 413, 854
StyI CCWWGG 4 cut(s) 163, 196, 586, 1011
TaaI ACNGT 2 cut(s) 274, 331
TaqI TCGA 1 cut(s) 1062
TatI WGTACW 1 cut(s) 787
TfiI GAWTC 2 cut(s) 531, 1064
Tru1I TTAA 7 cut(s) 204, 213, 390, 434, 761, 1020, 1150
Tru9I TTAA 7 cut(s) 204, 213, 390, 434, 761, 1020, 1150
TscAI CASTG 3 cut(s) 244, 690, 945
TseFI GTSAC 3 cut(s) 268, 475, 867
TseI GCWGC 2 cut(s) 155, 935
Tsp45I GTSAC 3 cut(s) 268, 475, 867
TspDTI ATGAA 8 cut(s) 385, 587, 647, 665, 830, 904, 989, 1019
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 3 cut(s) 244, 690, 945
VpaK11BI GGWCC 2 cut(s) 9, 149
XapI RAATTY 4 cut(s) 128, 670, 718, 893
XceI RCATGY 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 1076
XspI CTAG 2 cut(s) 554, 644
ZrmI AGTACT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.