Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Reverse (-)

65294384 .. 65298773

Gene Structure 4390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATTTGAAAGACAAGGCCGCTGTGGCAGGTTGGACTGCAGCGCACGACGGAACTGAGGCACCAGTGGAGGGAACCAAAGCAGCTGCAAGATTAGTTGCCGAAGCAGCAGGATTCTCTGCTGTGGTGACTGGTGAGAAAGCCGAGGAGTTCACTGCTCGGAAGAAGGTAGAGGCGATGAGAAAATATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCCAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGTCGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAACTGAAAAAACCAACCAGAAACCGCACAGTTAGAGAGGGAGCGCAAGAGGGCGGTACCTGGGTGCCGGGAACAATCGGCAGGACTTGCGGTGTGATACCGAGAGCTGGTGAAAATGGAATGGTTGAGGAGAGCGAGGAAGGGTGGAGCTCAAATGCACAGCAAGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGTGGAGGTCATCTGAGAAGCAAGGCAGGCAGGAGGGGAGGTCATCTGTGCTGGTGGCGTTTTCCGCTGGTTTTACTGCTTTTGGGGTTCCTTTTCTTGTTTGGACGGTTGCGTTTGAGGACGATTCCTATGTGGACAGCTACGTCGGCACCATTGGAGTTGATTTTAAAATCAGGACGGTGGAGCTAGATGGGAAGACAGTCAATCTGCAGATTGTGAGTAGGAGTTGCTTTGTTTTCCACTTAGGTATCTCAAAGGTCCTGAGCTCCTTGTTGATTTACAAGATTATGACTATTCTTTGGAATTCGTATGAGTGCAGGTGTTTATGTTGGTGTAGAAGAGGACGGAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

291

Amino Acids

31.91

Weight (kDa)

9.25

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	825
AasI	GACNNNNNNGTC	1 cut(s)	659
Acc36I	ACCTGC	2 cut(s)	20, 825
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	4 cut(s)	61, 365, 373, 665
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	5 cut(s)	21, 334, 363, 399, 582
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	71, 242, 416
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	222, 368
AluBI	AGCT	8 cut(s)	86, 206, 416, 459, 492, 657, 703, 783
AluI	AGCT	8 cut(s)	86, 206, 416, 459, 492, 657, 703, 783
Alw21I	GWGCWC	3 cut(s)	461, 494, 785
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	3 cut(s)	18, 192, 218
ApeKI	GCWGC	5 cut(s)	41, 83, 86, 107, 203
ApoI	RAATTY	1 cut(s)	820
Asp718I	GGTACC	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	46, 355
AspS9I	GGNCC	2 cut(s)	219, 775
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	3 cut(s)	139, 146, 431
AvaII	GGWCC	1 cut(s)	775
BaeI	ACNNNNGTAYC	4 cut(s)	357, 390, 748, 781
BanI	GGYRCC	4 cut(s)	61, 365, 373, 665
BanII	GRGCYC	3 cut(s)	461, 494, 785
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	3 cut(s)	461, 494, 785
BbvI	GCAGC	5 cut(s)	53, 73, 95, 119, 215
BccI	CCATC	1 cut(s)	701
BciT130I	CCWGG	2 cut(s)	224, 370
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	2 cut(s)	39, 725
BfuAI	ACCTGC	2 cut(s)	20, 825
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	6 cut(s)	21, 42, 84, 87, 108, 204
BlsI	GCNGC	6 cut(s)	22, 43, 85, 88, 109, 205
Bme1390I	CCNGG	3 cut(s)	224, 370, 378
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	219, 775
BmiI	GGNNCC	7 cut(s)	63, 76, 221, 367, 375, 606, 667
BmrFI	CCNGG	3 cut(s)	224, 370, 378
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
Bpu10I	CCTNAGC	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	144, 222, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 277, 542, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 242, 416
Bse1I	ACTGG	3 cut(s)	65, 136, 271
BseBI	CCWGG	2 cut(s)	224, 370
BseDI	CCNNGG	3 cut(s)	144, 222, 369
BseLI	CCNNNNNNNGG	3 cut(s)	71, 242, 416
BseMII	CTCAG	4 cut(s)	48, 301, 522, 770
BseNI	ACTGG	3 cut(s)	65, 136, 271
BseRI	GAGGAG	4 cut(s)	161, 242, 268, 452
BseXI	GCAGC	5 cut(s)	53, 73, 95, 119, 215
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	853
BshFI	GGCC	3 cut(s)	20, 194, 220
BshNI	GGYRCC	4 cut(s)	61, 365, 373, 665
BsiHKAI	GWGCWC	3 cut(s)	461, 494, 785
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	71, 242, 416
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	3 cut(s)	20, 194, 220
Bsp1286I	GDGCHC	3 cut(s)	461, 494, 785
BspACI	CCGC	5 cut(s)	21, 334, 363, 399, 582
BspANI	GGCC	3 cut(s)	20, 194, 220
BspCNI	CTCAG	4 cut(s)	49, 300, 523, 771
BspLI	GGNNCC	7 cut(s)	63, 76, 221, 367, 375, 606, 667
BspMAI	CTGCAG	2 cut(s)	43, 729
BspMI	ACCTGC	2 cut(s)	20, 825
BspT107I	GGYRCC	4 cut(s)	61, 365, 373, 665
BsrI	ACTGG	3 cut(s)	65, 136, 271
BssECI	CCNNGG	3 cut(s)	144, 222, 369
Bst2UI	CCWGG	2 cut(s)	224, 370
Bst4CI	ACNGT	4 cut(s)	340, 625, 697, 718
Bst6I	CTCTTC	1 cut(s)	850
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	5 cut(s)	57, 287, 531, 760, 779
BstHHI	GCGC	2 cut(s)	46, 355
BstMAI	GTCTC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	224, 370
BstSCI	CCNGG	3 cut(s)	222, 368, 376
BstSFI	CTRYAG	2 cut(s)	39, 725
BstV1I	GCAGC	5 cut(s)	53, 73, 95, 119, 215
BstV2I	GAAGAC	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	20, 194, 220
BtgZI	GCGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	72, 153, 868
BveI	ACCTGC	2 cut(s)	20, 825
Cac8I	GCNNGC	1 cut(s)	545
CfoI	GCGC	2 cut(s)	46, 355
Cfr13I	GGNCC	2 cut(s)	219, 775
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	5 cut(s)	57, 287, 531, 760, 779
DraI	TTTAAA	1 cut(s)	685
DrdI	GACNNNNNNGTC	1 cut(s)	659
DseDI	GACNNNNNNGTC	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Ecl136II	GAGCTC	3 cut(s)	459, 492, 783
Eco24I	GRGCYC	3 cut(s)	461, 494, 785
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	3 cut(s)	459, 492, 783
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	3 cut(s)	459, 492, 783
EcoO109I	RGGNCCY	2 cut(s)	219, 775
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	222, 368
EcoT38I	GRGCYC	3 cut(s)	461, 494, 785
FaeI	CATG	1 cut(s)	263
FaiI	YATR	8 cut(s)	189, 261, 293, 295, 648, 806, 828, 844
FatI	CATG	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	6 cut(s)	21, 42, 84, 87, 108, 204
FriOI	GRGCYC	3 cut(s)	461, 494, 785
Fsp4HI	GCNGC	6 cut(s)	21, 42, 84, 87, 108, 204
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	2 cut(s)	45, 354
GluI	GCNGC	6 cut(s)	21, 42, 84, 87, 108, 204
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	20, 194, 220
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	2 cut(s)	46, 355
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	2 cut(s)	44, 353
HinP1I	GCGC	2 cut(s)	44, 353
HinfI	GANTC	4 cut(s)	114, 232, 283, 641
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	3 cut(s)	139, 146, 431
Hpy166II	GTNNAC	2 cut(s)	153, 652
Hpy188I	TCNGA	3 cut(s)	162, 278, 532
Hpy188III	TCNNGA	2 cut(s)	691, 778
Hpy8I	GTNNAC	2 cut(s)	153, 652
Hpy99I	CGWCG	2 cut(s)	53, 665
HpyAV	CCTTC	2 cut(s)	160, 443
HpyCH4III	ACNGT	4 cut(s)	340, 625, 697, 718
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	7 cut(s)	41, 89, 297, 467, 500, 727, 834
HpyF3I	CTNAG	5 cut(s)	57, 287, 531, 760, 779
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	2 cut(s)	44, 353
KpnI	GGTACC	1 cut(s)	369
LmnI	GCTCC	6 cut(s)	246, 350, 456, 489, 700, 788
Lsp1109I	GCAGC	5 cut(s)	53, 73, 95, 119, 215
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	175, 724, 867
MhlI	GDGCHC	3 cut(s)	461, 494, 785
MluCI	AATT	1 cut(s)	820
MmeI	TCCRAC	1 cut(s)	14
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	4 cut(s)	23, 86, 206, 584
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	3 cut(s)	224, 370, 378
MvaI	CCWGG	2 cut(s)	224, 370
NciI	CCSGG	1 cut(s)	378
NdeI	CATATG	1 cut(s)	293
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	7 cut(s)	63, 76, 221, 367, 375, 606, 667
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	825
PfeI	GAWTC	4 cut(s)	114, 232, 283, 641
PflFI	GACNNNGTC	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	22, 43, 85, 88, 109, 205
PpuMI	RGGWCCY	1 cut(s)	775
Psp124BI	GAGCTC	3 cut(s)	461, 494, 785
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	222, 368
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	222, 368
PspN4I	GGNNCC	7 cut(s)	63, 76, 221, 367, 375, 606, 667
PspPI	GGNCC	2 cut(s)	219, 775
PspPPI	RGGWCCY	1 cut(s)	775
PstI	CTGCAG	2 cut(s)	43, 729
PsyI	GACNNNGTC	1 cut(s)	261
PvuII	CAGCTG	2 cut(s)	86, 206
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacI	GAGCTC	3 cut(s)	461, 494, 785
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	6 cut(s)	21, 42, 84, 87, 108, 204
Sau96I	GGNCC	2 cut(s)	219, 775
ScrFI	CCNGG	3 cut(s)	224, 370, 378
SduI	GDGCHC	3 cut(s)	461, 494, 785
SfcI	CTRYAG	2 cut(s)	39, 725
SinI	GGWCC	1 cut(s)	775
Sse9I	AATT	1 cut(s)	820
SsiI	CCGC	5 cut(s)	21, 334, 363, 399, 582
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	3 cut(s)	461, 494, 785
StyD4I	CCNGG	3 cut(s)	222, 368, 376
TaaI	ACNGT	4 cut(s)	340, 625, 697, 718
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	265
TasI	AATT	1 cut(s)	820
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	4 cut(s)	114, 232, 283, 641
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	72, 160
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	5 cut(s)	41, 83, 86, 107, 203
Tsp45I	GTSAC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	72, 160
Tth111I	GACNNNGTC	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	1 cut(s)	820
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.