Rroxscaffold_1G00021770

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26783317 .. 26787500
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021770.1

Sequence Viewer

Length: 654 bp
ATGGAAGAGTATGATTTCTGTAGTTTGAGAGGAATTAAGTATAGAAAATTTGTTTGCGTATCTGAAATTACTTTCGATTTTACTTATTTATGGAAGAACCATTATGTTTTTTGGTTTTGGATATGTCAAATTAGGTGTTTCTTTGGTTTCCCTTTCGCTTTCTCCTGCAATCCCCGATTAAGTGACCTGTTCTGGTCTTTTCTGAACAAACCAGGTCCTCACAAAGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGGATTTCTCAATTTTCCGTTTGCGTTTTCAGCTTGATTTGCACAATGAACGACCTCCTCAAGGTAATTGATTCTCTATTTCTTGTTTGTTTTGATTTCTTCTGTTTTGGAGGTTTTTCTTCTGCTTTTGTCCTGATCAGGGGATCTGAGTTTTTATTTATTAAATCAAAATTTTGGATTTTTTTGTTTCTTTCTGTTTTGGCTTTCGAGTTAGTGATTCTGGGATTTGTTTGTTTAGTTCATTGGAGTTGGAACACGATTAAAGTATTGTTTGTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

26.83

Weight (kDa)

8.34

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 2 cut(s) 47, 542
AfiI CCNNNNNNNGG 3 cut(s) 224, 433, 511
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 405
AluI AGCT 1 cut(s) 405
AlwI GGATC 1 cut(s) 523
ApoI RAATTY 2 cut(s) 47, 542
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 507
BfaI CTAG 1 cut(s) 652
BfmI CTRYAG 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 433, 511
BseBI CCWGG 1 cut(s) 213
BseLI CCNNNNNNNGG 3 cut(s) 224, 433, 511
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 224, 433, 511
Bsp143I GATC 2 cut(s) 507, 515
BspCNI CTCAG 1 cut(s) 511
BspPI GGATC 1 cut(s) 523
BssMI GATC 2 cut(s) 507, 515
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 519
BstENI CCTNNNNNAGG 2 cut(s) 222, 431
BstKTI GATC 2 cut(s) 510, 518
BstMBI GATC 2 cut(s) 507, 515
BstMWI GCNNNNNNNGC 2 cut(s) 402, 411
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 211
CviJI RGCY 3 cut(s) 405, 575, 651
CviKI_1 RGCY 3 cut(s) 405, 575, 651
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 509, 517
DpnII GATC 2 cut(s) 507, 515
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 215
EcoNI CCTNNNNNAGG 2 cut(s) 222, 431
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 211
FaiI YATR 5 cut(s) 12, 42, 91, 105, 124
FbaI TGATCA 1 cut(s) 507
FspBI CTAG 1 cut(s) 652
HinfI GANTC 2 cut(s) 443, 589
Hpy188I TCNGA 3 cut(s) 64, 204, 520
Hpy188III TCNNGA 1 cut(s) 505
HpyCH4V TGCA 2 cut(s) 168, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 411
HpyF3I CTNAG 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 2 cut(s) 507, 515
LpnPI CCDG 8 cut(s) 178, 178, 198, 200, 225, 496, 518, 578
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 509, 517
MboI GATC 2 cut(s) 507, 515
MboII GAAGA 5 cut(s) 17, 106, 243, 463, 483
MflI RGATCY 1 cut(s) 515
MluCI AATT 7 cut(s) 33, 47, 66, 129, 383, 438, 542
MmeI TCCRAC 1 cut(s) 602
MnlI CCTC 5 cut(s) 23, 228, 437, 440, 476
MseI TTAA 4 cut(s) 36, 179, 534, 633
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 402, 411
NdeII GATC 2 cut(s) 507, 515
NmuCI GTSAC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 443, 589
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PsuI RGATCY 1 cut(s) 515
SaqAI TTAA 4 cut(s) 36, 179, 534, 633
Sau3AI GATC 2 cut(s) 507, 515
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 213
SetI ASST 7 cut(s) 137, 189, 217, 407, 429, 438, 487
SexAI ACCWGGT 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 7 cut(s) 33, 47, 66, 129, 383, 438, 542
SspMI CTAG 1 cut(s) 652
StyD4I CCNGG 1 cut(s) 211
TaqI TCGA 2 cut(s) 75, 579
TasI AATT 7 cut(s) 33, 47, 66, 129, 383, 438, 542
TfiI GAWTC 2 cut(s) 443, 589
Tru1I TTAA 4 cut(s) 36, 179, 534, 633
Tru9I TTAA 4 cut(s) 36, 179, 534, 633
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 434, 602
TspGWI ACGGA 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 215
XagI CCTNNNNNAGG 2 cut(s) 222, 431
XapI RAATTY 2 cut(s) 47, 542
XspI CTAG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.