Rroxscaffold_4G00309740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001392
Physical Location & Seq
Forward (+)
31531071 .. 31541158
10088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309740.1

Sequence Viewer

Length: 627 bp
ATGAAAATTAAGGTGAGGACTGAAAATCTACAAAACACCTCGAAAGATCTCGAACCCAAAATCTTCAAATCGTCGATTCCCTCAACTCCGAACAATTCGTGCTACAAGGCTAGTACCGGGATGATCGGCAGAGTGAGGGCTTCAAAACATAGGTGGTGGCGTGCAGGAGATGGTCGGAAAACAACGATCGGATCGGGTTTCTCCGTTTGGCACCGTGATCGGTTTTCTCATCGATTCTCTTTCTTCACGCGGGATAGCTCGAACCACATCCATGAGTTTGTAAAGGAGGAGGAGGCAGTTCAAACGACATCGGCAACGTGGCCGGGACAGCGAAGTAATAACGATTTTCTTTCGGGTGAGAAGCAAAGCACCTTCTTACTTGATCCAGAAGTTACTCGCCATAACAAACGTTTATTGCTTGATGTGAACAAGGGTTCTGAGACTACTCAAGGGGGAGAATCCAAAAGCCGGGAGCAAGAAGAGAGATGGATGAAACCAGTTGAAAAGGAATCTCAACATATGCAGAGAGAAGGTGGCAGACCAAGTGAAAAAACCAGCCAAGAACCATTCAATTACAAAGAGAGGGAGCGCGAGAGGGGTACTGGGTCTCTAATGATCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

24.16

Weight (kDa)

9.74

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AccII CGCG 2 cut(s) 250, 591
AciI CCGC 1 cut(s) 250
AclI AACGTT 1 cut(s) 409
AclWI GGATC 2 cut(s) 199, 377
AcoI YGGCCR 1 cut(s) 320
AfaI GTAC 2 cut(s) 115, 601
AfiI CCNNNNNNNGG 1 cut(s) 468
AgsI TTSAA 5 cut(s) 67, 144, 302, 503, 571
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 434, 612
AlwI GGATC 2 cut(s) 199, 377
AoxI GGCC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 591
AsuC2I CCSGG 3 cut(s) 118, 324, 470
AsuHPI GGTGA 2 cut(s) 25, 368
BanI GGYRCC 1 cut(s) 210
BccI CCATC 2 cut(s) 164, 480
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcnI CCSGG 3 cut(s) 118, 324, 470
BcoDI GTCTC 2 cut(s) 434, 612
BfaI CTAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 46
Bme1390I CCNGG 3 cut(s) 118, 324, 470
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 118, 324, 470
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 3 cut(s) 118, 324, 470
Bsa29I ATCGAT 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 2 cut(s) 497, 607
BseCI ATCGAT 1 cut(s) 232
BseGI GGATG 3 cut(s) 126, 267, 495
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 497, 607
BseRI GAGGAG 2 cut(s) 302, 305
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 250, 591
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 210
BshVI ATCGAT 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 3 cut(s) 117, 323, 469
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 434, 612
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 322
Bso31I GGTCTC 1 cut(s) 612
Bsp143I GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 430
BspDI ATCGAT 1 cut(s) 232
BspFNI CGCG 2 cut(s) 250, 591
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 2 cut(s) 199, 377
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 612
BsrI ACTGG 2 cut(s) 497, 607
BssMI GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 126, 267, 495
BstFNI CGCG 2 cut(s) 250, 591
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 7 cut(s) 49, 126, 189, 194, 220, 385, 618
BstMAI GTCTC 2 cut(s) 434, 612
BstMBI GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 116, 322, 468
BstUI CGCG 2 cut(s) 250, 591
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 232
BsuRI GGCC 1 cut(s) 322
BsuTUI ATCGAT 1 cut(s) 232
BtsCI GGATG 3 cut(s) 126, 267, 495
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 591
ClaI ATCGAT 1 cut(s) 232
Csp6I GTAC 2 cut(s) 114, 600
CviAII CATG 1 cut(s) 272
CviJI RGCY 6 cut(s) 110, 140, 258, 322, 468, 558
CviKI_1 RGCY 6 cut(s) 110, 140, 258, 322, 468, 558
CviQI GTAC 2 cut(s) 114, 600
DdeI CTNAG 1 cut(s) 438
DpnI GATC 7 cut(s) 48, 125, 188, 193, 219, 384, 617
DpnII GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 612
FaeI CATG 1 cut(s) 275
FaiI YATR 5 cut(s) 150, 273, 402, 519, 521
FaqI GGGAC 1 cut(s) 339
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 1 cut(s) 519
FokI GGATG 3 cut(s) 133, 254, 502
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 590
HaeIII GGCC 1 cut(s) 322
HapII CCGG 3 cut(s) 117, 323, 469
HhaI GCGC 1 cut(s) 591
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HinfI GANTC 4 cut(s) 76, 234, 458, 509
HpaII CCGG 3 cut(s) 117, 323, 469
HphI GGTGA 2 cut(s) 25, 368
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 90, 177, 191, 439
Hpy188III TCNNGA 2 cut(s) 50, 386
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 382, 524
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 317, 409
HpyCH4V TGCA 2 cut(s) 164, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 2 cut(s) 317, 409
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 589
Kzo9I GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
LmnI GCTCC 2 cut(s) 472, 586
LpnPI CCDG 8 cut(s) 130, 150, 336, 399, 482, 510, 568, 588
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 317, 409
MaeIII GTNAC 1 cut(s) 391
MalI GATC 7 cut(s) 48, 125, 188, 193, 219, 384, 617
MboI GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
MboII GAAGA 3 cut(s) 55, 235, 491
MfeI CAATTG 1 cut(s) 622
MflI RGATCY 1 cut(s) 46
MluCI AATT 4 cut(s) 6, 94, 571, 622
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 9 cut(s) 9, 49, 91, 129, 280, 283, 286, 576, 588
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 3 cut(s) 117, 323, 469
MspR9I CCNGG 3 cut(s) 118, 324, 470
MunI CAATTG 1 cut(s) 622
MvnI CGCG 2 cut(s) 250, 591
MwoI GCNNNNNNNGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 118, 324, 470
NdeI CATATG 1 cut(s) 519
NdeII GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 212
PfeI GAWTC 4 cut(s) 76, 234, 458, 509
Ple19I CGATCG 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 46
PvuI CGATCG 1 cut(s) 189
RsaI GTAC 2 cut(s) 115, 601
RsaNI GTAC 2 cut(s) 114, 600
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 7 cut(s) 46, 123, 186, 191, 217, 382, 615
ScrFI CCNGG 3 cut(s) 118, 324, 470
SetI ASST 8 cut(s) 15, 41, 155, 260, 320, 374, 412, 535
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 6, 94, 571, 622
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 116, 322, 468
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 320, 412
TaqI TCGA 5 cut(s) 41, 51, 74, 232, 260
TasI AATT 4 cut(s) 6, 94, 571, 622
TfiI GAWTC 4 cut(s) 76, 234, 458, 509
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 17, 506
TspGWI ACGGA 1 cut(s) 193
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.