Rh5AG081800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001392
Physical Location & Seq
Reverse (-)
7018516 .. 7019181
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG081800.1

Sequence Viewer

Length: 267 bp
ATGCACGACGGAACTGAGGCACCAGTGGAGGGAACCAAAGCAGCTGCAAGATTAGTTGCCGGAGCAGCAGGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAACTGAAAAAACCAACCAGAAACCGCACAGTTAGAGAGGGAGCGCAAGAGGGCGGTACCTGGGTGCCGGGAACAATCGGCAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.43

Weight (kDa)

11.14

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 3 cut(s) 19, 233, 241
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 2 cut(s) 202, 231
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 29, 110
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 73, 118
ApeKI GCWGC 3 cut(s) 41, 44, 65
Asp718I GGTACC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 246
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BanI GGYRCC 3 cut(s) 19, 233, 241
BbvI GCAGC 3 cut(s) 31, 53, 77
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 73, 118
BisI GCNGC 3 cut(s) 42, 45, 66
BlsI GCNGC 3 cut(s) 43, 46, 67
Bme1390I CCNGG 2 cut(s) 238, 246
BmiI GGNNCC 4 cut(s) 21, 34, 235, 243
BmrFI CCNGG 2 cut(s) 238, 246
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpuMI CCSGG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 110
Bse1I ACTGG 2 cut(s) 23, 139
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 29, 110
BseMII CTCAG 3 cut(s) 6, 68, 169
BseNI ACTGG 2 cut(s) 23, 139
BseRI GAGGAG 2 cut(s) 110, 136
BseXI GCAGC 3 cut(s) 31, 53, 77
BseYI CCCAGC 1 cut(s) 110
BshNI GGYRCC 3 cut(s) 19, 233, 241
BsiSI CCGG 2 cut(s) 60, 245
BslI CCNNNNNNNGG 2 cut(s) 29, 110
BsmAI GTCTC 2 cut(s) 73, 118
BspACI CCGC 2 cut(s) 202, 231
BspCNI CTCAG 3 cut(s) 7, 69, 168
BspLI GGNNCC 4 cut(s) 21, 34, 235, 243
BspT107I GGYRCC 3 cut(s) 19, 233, 241
BsrI ACTGG 2 cut(s) 23, 139
BssECI CCNNGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 15, 77, 155
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 73, 118
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 236, 244
BstV1I GCAGC 3 cut(s) 31, 53, 77
BtsIMutI CAGTG 1 cut(s) 30
CfoI GCGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 234
CviAII CATG 1 cut(s) 128
CviJI RGCY 2 cut(s) 44, 263
CviKI_1 RGCY 2 cut(s) 44, 263
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 15, 77, 155
EcoRII CCWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 129, 161, 163
FatI CATG 1 cut(s) 127
FauNDI CATATG 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 42, 45, 66
Fsp4HI GCNGC 3 cut(s) 42, 45, 66
GlaI GCGC 1 cut(s) 222
GluI GCNGC 3 cut(s) 42, 45, 66
GsaI CCCAGC 1 cut(s) 114
HapII CCGG 2 cut(s) 60, 245
HhaI GCGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 2 cut(s) 100, 151
HpaII CCGG 2 cut(s) 60, 245
Hpy188I TCNGA 2 cut(s) 78, 146
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 4, 47, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 15, 77, 155
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 237
LmnI GCTCC 3 cut(s) 62, 114, 218
Lsp1109I GCAGC 3 cut(s) 31, 53, 77
MnlI CCTC 7 cut(s) 10, 22, 88, 114, 140, 208, 220
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 60, 245
MspR9I CCNGG 2 cut(s) 238, 246
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 161
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 4 cut(s) 21, 34, 235, 243
PfeI GAWTC 2 cut(s) 100, 151
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 3 cut(s) 43, 46, 67
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 21, 34, 235, 243
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SatI GCNGC 3 cut(s) 42, 45, 66
ScrFI CCNGG 2 cut(s) 238, 246
SetI ASST 2 cut(s) 46, 239
SsiI CCGC 2 cut(s) 202, 231
StyD4I CCNGG 2 cut(s) 236, 244
TaaI ACNGT 1 cut(s) 208
TfiI GAWTC 2 cut(s) 100, 151
TscAI CASTG 1 cut(s) 30
TseI GCWGC 3 cut(s) 41, 44, 65
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.