Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000208.1

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Forward (+)

4472 .. 7500

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000208.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgatggctaacggcggagagggatctggtggcgatattcaaggcggtgagggagaaggagaggaagaagaggtgggcggtggaggaggaggagaagaagaagaagaaggaggcggaggtcaaggccaaggtggtggaggagaagaaggacaaggaggaggagaagagtggaaagagaggaatgaggaggttaatataatcattccagtgcctgctggaactaaatcaagggatattgtttatgaggccaagaagaacagtctgaagtttggaccgaagggtcggtctcttataactgatgttcgtcaacgtcttcattcattttttctgtactatgcagcaaaagatattctatcaagtgtagggaagaaaacggtggagcacacggtgccattagcagagaaaactaaagacatggccgtatttgcaggtaagaccactctgcattatgttggtcatgtttcggtggatttgaaagacaaggccgctgtggcaggttggactgtagcgcacgacggaactgaggcaccagtggagggaaccaaagcagctgcaagattatttgccggagcagcagggtatgctggtcatgaggctgtggatattgtgtccaagccttttgaggtgaaaatggaatggttgaggagagcgaggaagggtggagctcaaatgcacagcaaggagggcaagaatggagctcaaatgcacagcaagggaggcaggggtggaggtcatctgagaagcaaggcaggcaggaggggaggtcatctgtgctggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

260

Amino Acids

27.31

Weight (kDa)

6.57

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	2 cut(s)	419, 485
AccB1I	GGYRCC	2 cut(s)	388, 526
AciI	CCGC	5 cut(s)	15, 45, 78, 114, 486
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	41, 475
AluBI	AGCT	3 cut(s)	551, 665, 698
AluI	AGCT	3 cut(s)	551, 665, 698
Alw21I	GWGCWC	3 cut(s)	384, 667, 700
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	124, 246, 417, 483
ApeKI	GCWGC	4 cut(s)	338, 548, 551, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	59, 637
AvaII	GGWCC	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	388, 526
BanII	GRGCYC	2 cut(s)	667, 700
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	3 cut(s)	384, 667, 700
BbvI	GCAGC	4 cut(s)	350, 538, 560, 584
BceAI	ACGGC	2 cut(s)	28, 404
BcoDI	GTCTC	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	2 cut(s)	419, 485
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	5 cut(s)	339, 486, 549, 552, 573
BlsI	GCNGC	5 cut(s)	340, 487, 550, 553, 574
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	390, 528, 541
BpiI	GAAGAC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	206, 530
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	513, 728
BseNI	ACTGG	2 cut(s)	206, 530
BseRI	GAGGAG	8 cut(s)	99, 102, 105, 153, 171, 174, 200, 658
BseXI	GCAGC	4 cut(s)	350, 538, 560, 584
BshFI	GGCC	4 cut(s)	126, 248, 419, 485
BshNI	GGYRCC	2 cut(s)	388, 526
BsiHKAI	GWGCWC	3 cut(s)	384, 667, 700
BsiSI	CCGG	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	126, 248, 419, 485
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	384, 667, 700
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	5 cut(s)	15, 45, 78, 114, 486
BspANI	GGCC	4 cut(s)	126, 248, 419, 485
BspCNI	CTCAG	2 cut(s)	514, 729
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	390, 528, 541
BspMI	ACCTGC	2 cut(s)	419, 485
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	2 cut(s)	388, 526
BspTNI	GGTCTC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	206, 530
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	4 cut(s)	260, 376, 388, 505
Bst6I	CTCTTC	2 cut(s)	63, 159
BstAPI	GCANNNNNTGC	2 cut(s)	388, 581
BstC8I	GCNNGC	2 cut(s)	213, 751
BstDEI	CTNAG	2 cut(s)	522, 737
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	8 cut(s)	388, 425, 491, 572, 581, 684, 717, 750
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	4 cut(s)	350, 538, 560, 584
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	4 cut(s)	126, 248, 419, 485
BtsIMutI	CAGTG	2 cut(s)	213, 537
BveI	ACCTGC	2 cut(s)	419, 485
Cac8I	GCNNGC	2 cut(s)	213, 751
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	415, 458, 590
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	522, 737
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DraIII	CACNNNGTG	1 cut(s)	388
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	63, 159
EarI	CTCTTC	2 cut(s)	63, 159
EciI	GGCGGA	2 cut(s)	30, 129
Ecl136II	GAGCTC	2 cut(s)	665, 698
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	2 cut(s)	667, 700
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	665, 698
Eco57I	CTGAAG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	665, 698
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	667, 700
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	418, 461, 593
FaiI	YATR	9 cut(s)	197, 243, 293, 336, 416, 450, 459, 582, 591
FatI	CATG	3 cut(s)	414, 457, 589
Fnu4HI	GCNGC	5 cut(s)	339, 486, 549, 552, 573
FriOI	GRGCYC	2 cut(s)	667, 700
Fsp4HI	GCNGC	5 cut(s)	339, 486, 549, 552, 573
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	5 cut(s)	339, 486, 549, 552, 573
HaeIII	GGCC	4 cut(s)	126, 248, 419, 485
HapII	CCGG	1 cut(s)	567
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	418, 461, 593
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	2 cut(s)	59, 637
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	264, 738
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	5 cut(s)	50, 101, 140, 271, 649
HpyCH4III	ACNGT	4 cut(s)	260, 376, 388, 505
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	6 cut(s)	338, 428, 445, 554, 673, 706
HpyF10VI	GCNNNNNNNGC	8 cut(s)	388, 425, 491, 572, 581, 684, 717, 750
HpyF3I	CTNAG	2 cut(s)	522, 737
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	418, 461, 593
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	4 cut(s)	379, 569, 662, 695
Lsp1109I	GCAGC	4 cut(s)	350, 538, 560, 584
MaeII	ACGT	1 cut(s)	310
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	384, 667, 700
MmeI	TCCRAC	1 cut(s)	479
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	488, 551
MspI	CCGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	8 cut(s)	388, 425, 491, 572, 581, 684, 717, 750
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	3 cut(s)	418, 461, 593
NlaIV	GGNNCC	3 cut(s)	390, 528, 541
PagI	TCATGA	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	340, 487, 550, 553, 574
PsiI	TTATAA	1 cut(s)	293
Psp124BI	GAGCTC	2 cut(s)	667, 700
PspN4I	GGNNCC	3 cut(s)	390, 528, 541
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	667, 700
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	339, 486, 549, 552, 573
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	384, 667, 700
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	206
SsiI	CCGC	5 cut(s)	15, 45, 78, 114, 486
SstI	GAGCTC	2 cut(s)	667, 700
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	260, 376, 388, 505
TaiI	ACGT	1 cut(s)	313
TaqII	GACCGA	2 cut(s)	273, 289
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	213, 537
TseI	GCWGC	4 cut(s)	338, 548, 551, 572
TspDTI	ATGAA	2 cut(s)	305, 309
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	213, 537
VpaK11BI	GGWCC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.