Rh5CG490000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001392
Physical Location & Seq
Reverse (-)
68314118 .. 68314679
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG490000.1

Sequence Viewer

Length: 315 bp
ATGCTGTTCATAAAGCTGTGGATATTGTGCCCAAGCCTTTTGAGTGCTGCTAAAGATGCTGCTGTGGTGACTGGTGAGAAAGCTGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTTATCAAGGAGGAGAATCCCAATGCTGGGAGCAAGAGAGACATGGCCGAAACCAGTTCAGAGGGAATCTCATCATATGCAGAGTGGCAGACCAACTGAAAAAACTAGCCAGAAACCGCTCAGTTACAGAGGGAGTGCCAGAGGGCGGTACCTGGGTGCTGGGAACAATCAGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

9.41

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 2 cut(s) 250, 279
AcoI YGGCCR 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 3 cut(s) 159, 160, 278
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 16, 83, 101
AluI AGCT 3 cut(s) 16, 83, 101
Alw26I GTCTC 2 cut(s) 122, 166
AoxI GGCC 3 cut(s) 87, 113, 178
ApeKI GCWGC 3 cut(s) 47, 59, 98
Asp718I GGTACC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 79, 86
BaeGI GKGCMC 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 34, 46, 110
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 122, 166
BfaI CTAG 1 cut(s) 239
BisI GCNGC 3 cut(s) 48, 60, 99
BlsI GCNGC 3 cut(s) 49, 61, 100
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 186, 218
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 117, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 160, 278
Bse1I ACTGG 2 cut(s) 76, 187
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 117, 285
BseLI CCNNNNNNNGG 3 cut(s) 159, 160, 278
BseMII CTCAG 3 cut(s) 75, 117, 267
BseNI ACTGG 2 cut(s) 76, 187
BseRI GAGGAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 3 cut(s) 34, 46, 110
BseYI CCCAGC 2 cut(s) 159, 292
BshFI GGCC 3 cut(s) 89, 115, 180
BshNI GGYRCC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 159, 160, 278
BsmAI GTCTC 2 cut(s) 122, 166
BsnI GGCC 3 cut(s) 89, 115, 180
Bsp1286I GDGCHC 1 cut(s) 32
BspACI CCGC 2 cut(s) 250, 279
BspANI GGCC 3 cut(s) 89, 115, 180
BspCNI CTCAG 3 cut(s) 76, 118, 266
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 76, 187
BssECI CCNNGG 2 cut(s) 117, 285
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 84, 126, 253
BstMAI GTCTC 2 cut(s) 122, 166
BstMWI GCNNNNNNNGC 3 cut(s) 56, 95, 104
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 34, 46, 110
BsuRI GGCC 3 cut(s) 89, 115, 180
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 176
CviJI RGCY 8 cut(s) 16, 36, 83, 89, 101, 115, 180, 242
CviKI_1 RGCY 8 cut(s) 16, 36, 83, 89, 101, 115, 180, 242
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 84, 126, 253
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 11, 177, 209, 211
FatI CATG 1 cut(s) 175
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 48, 60, 99
Fsp4HI GCNGC 3 cut(s) 48, 60, 99
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 48, 60, 99
GsaI CCCAGC 2 cut(s) 163, 296
HaeIII GGCC 3 cut(s) 89, 115, 180
Hin1II CATG 1 cut(s) 179
HinfI GANTC 2 cut(s) 149, 199
HphI GGTGA 2 cut(s) 79, 86
Hpy188I TCNGA 2 cut(s) 127, 194
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 95, 104
HpyF3I CTNAG 3 cut(s) 84, 126, 253
Hsp92II CATG 1 cut(s) 179
KpnI GGTACC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 57, 145, 200, 256, 271, 278, 285, 292, 298
Lsp1109I GCAGC 3 cut(s) 34, 46, 110
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 67, 256
MbiI CCGCTC 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 32
MnlI CCTC 5 cut(s) 79, 137, 188, 256, 268
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 56, 95, 104
NdeI CATATG 1 cut(s) 209
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 149, 199
PkrI GCNGC 3 cut(s) 49, 61, 100
Psp6I CCWGG 1 cut(s) 284
PspFI CCCAGC 2 cut(s) 159, 292
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SatI GCNGC 3 cut(s) 48, 60, 99
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 18, 85, 103, 287
SfaNI GCATC 1 cut(s) 46
SsiI CCGC 2 cut(s) 250, 279
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 117
TfiI GAWTC 2 cut(s) 149, 199
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 47, 59, 98
Tsp45I GTSAC 1 cut(s) 67
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.