Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005742.1

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Reverse (-)

88029 .. 89161

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005742.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggtggagtacatggtgccattagcagagaaaactaaagacatggccgtgtctgcaagtaagaccactctgcattatgctggtcatgttgcggaagatttcaaggacaaggtgactgtggcagattggactgcagcgcactatgcaactgaggcagcagtggagggaaccaaagcagctgcaagagtagttgccggagcagcagggtatgccggtcatgctgctgtggtgactggtgagaaagctgaggagttcactgctcggaagaaggaagaggcgaagagagaatatgaggccaagaaagcagctgaagcaaataggaccaagggttctgagactacttatcaaggaggagaatccaaatgctgggagcaagaggagacatggacgaaaccagttcagagggaatctcagcatatgcggagtggcagaccaactgaaaaaactagccagaaaccgctcaattacagagggagcgcgagagggcggtacctgggtgctgcgaacaatcggcaggacttgaggatgaaactggaattgttgagagtgaggaagggtggagctcaaatgcacaacaaggagggcaggaatagaggtcatctgagaagcaaggcaggcaggaagggggggggggtgtcatctgtgatggtggtgatggtactagaacatgatccgcttaatgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.07

Weight (kDa)

9.64

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	2 cut(s)	16, 489
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	460
AccII	CGCG	1 cut(s)	479
AciI	CCGC	5 cut(s)	92, 421, 458, 487, 674
AclWI	GGATC	1 cut(s)	665
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	3 cut(s)	11, 491, 660
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	492
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
AluBI	AGCT	4 cut(s)	179, 245, 308, 563
AluI	AGCT	4 cut(s)	179, 245, 308, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	329, 374
AlwI	GGATC	1 cut(s)	665
AoxI	GGCC	2 cut(s)	45, 294
ApeKI	GCWGC	8 cut(s)	134, 155, 176, 179, 200, 221, 305, 500
Asp718I	GGTACC	1 cut(s)	489
AspLEI	GCGC	2 cut(s)	139, 479
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	124, 241, 248, 664
AvaII	GGWCC	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	481, 514
BanI	GGYRCC	2 cut(s)	16, 489
BanII	GRGCYC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	8 cut(s)	146, 166, 167, 188, 208, 212, 317, 487
BccI	CCATC	2 cut(s)	640, 649
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	329, 374
BfaI	CTAG	2 cut(s)	447, 662
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	8 cut(s)	135, 156, 177, 180, 201, 222, 306, 501
BlsI	GCNGC	8 cut(s)	136, 157, 178, 181, 202, 223, 307, 502
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	3 cut(s)	18, 169, 491
BmrFI	CCNGG	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	324, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	238, 395, 537
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	324, 493
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	5 cut(s)	141, 237, 324, 425, 593
BseNI	ACTGG	3 cut(s)	238, 395, 537
BseRI	GAGGAG	3 cut(s)	263, 366, 392
BseXI	GCAGC	8 cut(s)	146, 166, 167, 188, 208, 212, 317, 487
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	47, 296
BshNI	GGYRCC	2 cut(s)	16, 489
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	195, 213
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	329, 374
BsnI	GGCC	2 cut(s)	47, 296
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	1 cut(s)	670
BspACI	CCGC	5 cut(s)	92, 421, 458, 487, 674
BspANI	GGCC	2 cut(s)	47, 296
BspCNI	CTCAG	5 cut(s)	142, 238, 325, 424, 594
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	3 cut(s)	18, 169, 491
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	665
BspT107I	GGYRCC	2 cut(s)	16, 489
BsrBI	CCGCTC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	238, 395, 537
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	324, 493
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	267, 275
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	5 cut(s)	150, 246, 333, 411, 602
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	139, 479
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	2 cut(s)	329, 374
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 143, 152, 200, 209, 218, 302, 311, 615
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	8 cut(s)	146, 166, 167, 188, 208, 212, 317, 487
BsuRI	GGCC	2 cut(s)	47, 296
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	2 cut(s)	165, 255
BtsIMutI	CAGTG	2 cut(s)	165, 255
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	2 cut(s)	139, 479
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	10, 490, 659
CviAII	CATG	6 cut(s)	13, 43, 86, 218, 384, 668
CviJI	RGCY	7 cut(s)	47, 179, 245, 296, 308, 450, 563
CviKI_1	RGCY	7 cut(s)	47, 179, 245, 296, 308, 450, 563
CviQI	GTAC	3 cut(s)	10, 490, 659
DdeI	CTNAG	5 cut(s)	150, 246, 333, 411, 602
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	267, 275
EarI	CTCTTC	2 cut(s)	267, 275
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	16, 46, 89, 221, 387, 671
FatI	CATG	6 cut(s)	12, 42, 85, 217, 383, 667
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	8 cut(s)	135, 156, 177, 180, 201, 222, 306, 501
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	8 cut(s)	135, 156, 177, 180, 201, 222, 306, 501
FspBI	CTAG	2 cut(s)	447, 662
GlaI	GCGC	2 cut(s)	138, 478
GluI	GCNGC	8 cut(s)	135, 156, 177, 180, 201, 222, 306, 501
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	47, 296
HapII	CCGG	2 cut(s)	195, 213
HhaI	GCGC	2 cut(s)	139, 479
Hin1II	CATG	6 cut(s)	16, 46, 89, 221, 387, 671
Hin6I	GCGC	2 cut(s)	137, 477
HinP1I	GCGC	2 cut(s)	137, 477
HinfI	GANTC	2 cut(s)	356, 407
HpaII	CCGG	2 cut(s)	195, 213
HphI	GGTGA	4 cut(s)	124, 241, 248, 664
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	4 cut(s)	264, 334, 402, 603
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	262, 547, 616
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	56, 73, 134, 146, 182, 571
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 143, 152, 200, 209, 218, 302, 311, 615
HpyF3I	CTNAG	5 cut(s)	150, 246, 333, 411, 602
Hsp92II	CATG	6 cut(s)	16, 46, 89, 221, 387, 671
HspAI	GCGC	2 cut(s)	137, 477
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	4 cut(s)	197, 370, 474, 560
Lsp1109I	GCAGC	8 cut(s)	146, 166, 167, 188, 208, 212, 317, 487
MaeI	CTAG	2 cut(s)	447, 662
MaeIII	GTNAC	2 cut(s)	112, 229
MalI	GATC	1 cut(s)	672
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	107, 277, 284, 292
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	2 cut(s)	463, 536
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	179, 308
MspI	CCGG	2 cut(s)	195, 213
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	9 cut(s)	53, 143, 152, 200, 209, 218, 302, 311, 615
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	1 cut(s)	670
NlaIII	CATG	6 cut(s)	16, 46, 89, 221, 387, 671
NlaIV	GGNNCC	3 cut(s)	18, 169, 491
NmuCI	GTSAC	2 cut(s)	112, 229
PfeI	GAWTC	2 cut(s)	356, 407
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	8 cut(s)	136, 157, 178, 181, 202, 223, 307, 502
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	3 cut(s)	18, 169, 491
PspPI	GGNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	136
PvuII	CAGCTG	2 cut(s)	179, 308
RsaI	GTAC	3 cut(s)	11, 491, 660
RsaNI	GTAC	3 cut(s)	10, 490, 659
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	8 cut(s)	135, 156, 177, 180, 201, 222, 306, 501
Sau3AI	GATC	1 cut(s)	670
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	7 cut(s)	114, 181, 247, 310, 495, 565, 598
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	2 cut(s)	463, 536
SsiI	CCGC	5 cut(s)	92, 421, 458, 487, 674
SspMI	CTAG	2 cut(s)	447, 662
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	2 cut(s)	463, 536
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	356, 407
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	2 cut(s)	165, 262
TseFI	GTSAC	2 cut(s)	112, 229
TseI	GCWGC	8 cut(s)	134, 155, 176, 179, 200, 221, 305, 500
Tsp45I	GTSAC	2 cut(s)	112, 229
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	165, 262
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	321
XspI	CTAG	2 cut(s)	447, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.