Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0001392

Physical Location & Seq

Genomic Coordinates Forward (+)

43570 .. 46505

Gene Structure 2936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggaggaggagaggaagaagaggtgggcggcggaggaggaggagaagaaggaggcggaggtcaaggccaaggaggaggccaaggtggttgaggagaagaaggacaaggagaaggagaagagtggaaagagagtgcctgctggaactaaatcaagggatattgtttatgaggccaagaagaaccgtctgaagtttggactgaaggcaaaagatattctatcaagtgtagggaagaaaacggtggagtacactgtgccattagcagagaaaactaaagacatggccgtgtttgcaggtaagaccactctgcattatgttggttatgttgcggtgaatttgaaggacaaggccgctgtggcaggttggactgcagcgcacgacggaactgaggcaccagtggagggaaccaaagcagctgcaagagtagttgccggagcagcaggatgctctgctgtggtgactggtgagaaagctaaggagttcactgctcggaagaaggtagaggcgaagagagaatatgaggccaagaaagcagctgaagcaaataggcccaagggtgaaaatggaatggttgaggagagcgaggaagggtggagctcaaatgcacagcaaggagggcaagaatggagctcaagtacagcaagggaggtaggggtggaggtcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

222

Amino Acids

24.18

Weight (kDa)

8.98

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42560
fragaria_vesca	FvH4_6g27100 FvH4_6g27100
malus_domestica	MD17G1233000.v1.1
prunus_persica	Prupe.3G123300_v2.0.a1
pyrus_communis	pycom04g10710 pycom09g15870 pycom17g23590
rosa_chinensis	RchiOBHm_Chr2g0128441 RchiOBHm_Chr6g0287441
rosa_laevigata	RLG00000019047 RLG00000030655 RLG00000030661
rosa_multiflora	Rmu_co8518749.1_g000002 Rmu_sc0000208.1_g000002 Rmu_sc0001861.1_g000007 Rmu_sc0002372.1_g000013 Rmu_sc0005742.1_g000010 Rmu_sc0005742.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021770 Rroxscaffold_2G00114920 Rroxscaffold_2G00135280 Rroxscaffold_3G00226510 Rroxscaffold_4G00309740 Rroxscaffold_7G00214810
rosa_rugosa	Rorug02G0047700 Rorug02G0283800 Rorug03G0354300.1 Rorug03G0354400
rosa_samantha	Rh1BG033000 Rh1DG030600 Rh2AG200900 Rh2AG275500 Rh2AG275600 Rh2AG336300 Rh2BG213800 Rh2BG344300 Rh2CG323200 Rh2CG323300 Rh2DG208400 Rh2DG360900 Rh4BG046300 Rh4DG087300 Rh5AG081800 Rh5BG468100 Rh5CG062100 Rh5CG490000 Rh6AG141000 Rh6AG141100 Rh6AG212400
rosa_wichuraiana	Rw0G005740 Rw2G015990 Rw2G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	284, 350
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	5 cut(s)	29, 32, 56, 329, 351
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	3 cut(s)	209, 221, 558
AfaI	GTAC	2 cut(s)	248, 637
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	5 cut(s)	416, 473, 536, 597, 630
AluI	AGCT	5 cut(s)	416, 473, 536, 597, 630
Alw21I	GWGCWC	2 cut(s)	599, 632
AoxI	GGCC	7 cut(s)	66, 78, 171, 282, 348, 522, 548
ApeKI	GCWGC	5 cut(s)	371, 413, 416, 437, 533
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	4 cut(s)	343, 469, 476, 569
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	599, 632
Bbv12I	GWGCWC	2 cut(s)	599, 632
BbvI	GCAGC	5 cut(s)	383, 403, 425, 449, 545
BceAI	ACGGC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	284, 350
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	7 cut(s)	30, 351, 372, 414, 417, 438, 534
BlsI	GCNGC	7 cut(s)	31, 352, 373, 415, 418, 439, 535
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	393, 406
BmsI	GCATC	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	616
BsaJI	CCNNGG	3 cut(s)	69, 81, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	395, 466
BseDI	CCNNGG	3 cut(s)	69, 81, 552
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	395, 466
BseRI	GAGGAG	8 cut(s)	20, 23, 50, 53, 56, 89, 107, 590
BseXI	GCAGC	5 cut(s)	383, 403, 425, 449, 545
BshFI	GGCC	7 cut(s)	68, 80, 173, 284, 350, 524, 550
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	599, 632
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	7 cut(s)	68, 80, 173, 284, 350, 524, 550
Bsp1286I	GDGCHC	2 cut(s)	599, 632
BspACI	CCGC	5 cut(s)	29, 32, 56, 329, 351
BspANI	GGCC	7 cut(s)	68, 80, 173, 284, 350, 524, 550
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	393, 406
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	2 cut(s)	284, 350
BspT107I	GGYRCC	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	395, 466
BssECI	CCNNGG	3 cut(s)	69, 81, 552
BssT1I	CCWWGG	3 cut(s)	69, 81, 552
Bst4CI	ACNGT	3 cut(s)	185, 241, 253
Bst6I	CTCTTC	3 cut(s)	14, 113, 503
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	387, 474
BstF5I	GGATG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 356, 437, 530, 539, 616
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	5 cut(s)	383, 403, 425, 449, 545
BsuRI	GGCC	7 cut(s)	68, 80, 173, 284, 350, 524, 550
BtsCI	GGATG	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	249, 402, 483
BveI	ACCTGC	2 cut(s)	284, 350
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	247, 636
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	2 cut(s)	247, 636
DdeI	CTNAG	2 cut(s)	387, 474
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	14, 113, 503
EarI	CTCTTC	3 cut(s)	14, 113, 503
EciI	GGCGGA	2 cut(s)	47, 71
Ecl136II	GAGCTC	2 cut(s)	597, 630
Eco130I	CCWWGG	3 cut(s)	69, 81, 552
Eco24I	GRGCYC	2 cut(s)	599, 632
Eco53kI	GAGCTC	2 cut(s)	597, 630
Eco57I	CTGAAG	3 cut(s)	209, 221, 558
EcoICRI	GAGCTC	2 cut(s)	597, 630
EcoT14I	CCWWGG	3 cut(s)	69, 81, 552
EcoT38I	GRGCYC	2 cut(s)	599, 632
ErhI	CCWWGG	3 cut(s)	69, 81, 552
FaeI	CATG	1 cut(s)	283
FaiI	YATR	5 cut(s)	168, 281, 315, 324, 519
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	7 cut(s)	30, 351, 372, 414, 417, 438, 534
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	599, 632
Fsp4HI	GCNGC	7 cut(s)	30, 351, 372, 414, 417, 438, 534
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	7 cut(s)	30, 351, 372, 414, 417, 438, 534
HaeIII	GGCC	7 cut(s)	68, 80, 173, 284, 350, 524, 550
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	4 cut(s)	343, 469, 476, 569
Hpy166II	GTNNAC	2 cut(s)	249, 483
Hpy188I	TCNGA	3 cut(s)	189, 492, 668
Hpy8I	GTNNAC	2 cut(s)	249, 483
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	7 cut(s)	43, 94, 106, 196, 334, 490, 581
HpyCH4III	ACNGT	3 cut(s)	185, 241, 253
HpyCH4V	TGCA	5 cut(s)	293, 310, 371, 419, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 356, 437, 530, 539, 616
HpyF3I	CTNAG	2 cut(s)	387, 474
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	374
LmnI	GCTCC	3 cut(s)	434, 594, 627
LpnPI	CCDG	8 cut(s)	126, 150, 279, 345, 408, 426, 445, 447
Lsp1109I	GCAGC	5 cut(s)	383, 403, 425, 449, 545
LweI	GCATC	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	457
MboII	GAAGA	9 cut(s)	28, 31, 58, 109, 130, 190, 244, 505, 520
MhlI	GDGCHC	2 cut(s)	599, 632
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	3 cut(s)	353, 416, 536
MspI	CCGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	6 cut(s)	290, 356, 437, 530, 539, 616
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	393, 406
NmuCI	GTSAC	1 cut(s)	457
PkrI	GCNGC	7 cut(s)	31, 352, 373, 415, 418, 439, 535
Psp124BI	GAGCTC	2 cut(s)	599, 632
PspN4I	GGNNCC	2 cut(s)	393, 406
PspPI	GGNCC	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	373
PvuII	CAGCTG	2 cut(s)	416, 536
RsaI	GTAC	2 cut(s)	248, 637
RsaNI	GTAC	2 cut(s)	247, 636
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	2 cut(s)	599, 632
SatI	GCNGC	7 cut(s)	30, 351, 372, 414, 417, 438, 534
Sau96I	GGNCC	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	599, 632
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	5 cut(s)	29, 32, 56, 329, 351
SstI	GAGCTC	2 cut(s)	599, 632
StyI	CCWWGG	3 cut(s)	69, 81, 552
TaaI	ACNGT	3 cut(s)	185, 241, 253
TasI	AATT	1 cut(s)	334
TatI	WGTACW	2 cut(s)	246, 635
TauI	GCSGC	2 cut(s)	32, 353
TscAI	CASTG	3 cut(s)	256, 402, 490
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	5 cut(s)	371, 413, 416, 437, 533
Tsp45I	GTSAC	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	3 cut(s)	256, 402, 490
XapI	RAATTY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.