AT3G28690
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000641
Physical Location & Seq
Forward (+)
10754808 .. 10757885
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28690.2

Sequence Viewer

Length: 1131 bp
ATGAGCGGGGAATTGAAGTATTCTTCTAAGCTACGGATTTTCATGTTTAACGACCTTAAGTTAGCCACTAGGAATTTCAGACCAGAGTCTCTTCTCGGTGAGGGTGGGTTTGGATGTGTTTTTAAAGGATGGATAGAGGAGAATGGAACTGCACCTGTCAAGCCTGGTACTGGTCTAACTGTAGCTGTCAAAACACTGAACCCAGATGGCCTTCAAGGTCACAAGGAGTGGCTGGCTGAAATTAACTTCCTTGGAAACCTTGTTCACCCCAGTCTGGTTAAATTAGTTGGCTACTGCATGGAAGAAGACCAAAGGCTGCTTGTTTACGAGTTTATGCCACGAGGAAGTTTGGAGAACCATCTTTTCAGAAGGACCTTACCTCTCCCTTGGTCTGTTCGAATGAAAATTGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGCTGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATTTTACTGGATGGGGAATATAATGCAAAGCTCTCTGATTTTGGGCTTGCAAAAGATGCTCCAGACGAGAAAAAATCCCACGTATCAACCCGAGTCATGGGAACTTATGGTTATGCTGCCCCTGAATATGTAATGACTGGACATCTGACAACGAAGAGCGATGTATACAGTTTTGGAGTAGTTTTACTTGAAATATTAACTGGACGAAGATCTGTGGATAAAAGTCGGCCGAACGGGGAACAGAACTTGGTAGAATGGGTGAGACCTCATCTCTTAGACAAGAAAAGGTTTTACCGGCTATTAGATCCTCGGTTAGAGGGTCACTACTCGATCAAAGGTGCTCAGAAAGCCACACAAGTAGCGGCGCAATGCCTTAACCGAGACTCCAAAGCCAGACCGAAAATGAGTGAAGTTGTGGAAGCCTTAAAGCCATTACCAAATCTTAAAGACTTTGCTAGCTCTTCTTCTTCTTTCCAAACAATGCAGCCTGTTGCTAAGAACGGAGTCAGAACACAAGGAGGAGGGTTTGTGTCGAGAAATGGACCGCCAATGAGGAGTTTGTCTAGCTTAAACTTGCCTCAAGCATCCCCTTATCGTTATGCCCGTCAATCACCAAAGCCTAAAGGAAAAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

376

Amino Acids

41.96

Weight (kDa)

9.61

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 129 - 404 1.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 130 - 406 4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 657
AciI CCGC 3 cut(s) 6, 854, 1037
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 1 cut(s) 73
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 170, 274, 589
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 4 cut(s) 16, 215, 481, 683
AjnI CCWGG 1 cut(s) 163
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 7 cut(s) 31, 185, 422, 452, 523, 951, 1059
AluI AGCT 7 cut(s) 31, 185, 422, 452, 523, 951, 1059
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 4 cut(s) 93, 434, 748, 867
AlwI GGATC 1 cut(s) 791
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 2 cut(s) 208, 719
ApeKI GCWGC 4 cut(s) 316, 419, 608, 976
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 2 cut(s) 372, 1034
AsuHPI GGTGA 4 cut(s) 110, 257, 763, 1095
AsuII TTCGAA 1 cut(s) 397
AsuNHI GCTAGC 1 cut(s) 947
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 2 cut(s) 372, 1034
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 835
BbvI GCAGC 4 cut(s) 303, 431, 595, 988
BccI CCATC 4 cut(s) 123, 200, 366, 497
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 4 cut(s) 93, 434, 748, 867
BfaI CTAG 3 cut(s) 69, 948, 1056
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 701
BisI GCNGC 5 cut(s) 317, 420, 609, 855, 977
BlsI GCNGC 5 cut(s) 318, 421, 610, 856, 978
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 2 cut(s) 372, 1034
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 372, 1034
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 538, 1085
BmtI GCTAGC 1 cut(s) 951
BmuI ACTGGG 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 1056
BsaAI YACGTR 1 cut(s) 574
BsaI GGTCTC 2 cut(s) 434, 748
BsaJI CCNNGG 3 cut(s) 250, 386, 800
BsaXI ACNNNNNCTCC 4 cut(s) 860, 890, 1005, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 274, 589
Bse118I RCCGGY 1 cut(s) 786
Bse1I ACTGG 6 cut(s) 175, 270, 461, 504, 634, 697
Bse3DI GCAATG 1 cut(s) 866
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 250, 386, 800
BseGI GGATG 4 cut(s) 119, 134, 508, 1076
BseLI CCNNNNNNNGG 3 cut(s) 170, 274, 589
BseMI GCAATG 1 cut(s) 866
BseMII CTCAG 2 cut(s) 444, 848
BseNI ACTGG 6 cut(s) 175, 270, 461, 504, 634, 697
BseRI GAGGAG 3 cut(s) 152, 1026, 1060
BseX3I CGGCCG 1 cut(s) 719
BseXI GCAGC 4 cut(s) 303, 431, 595, 988
BsgI GTGCAG 2 cut(s) 135, 438
Bsh1285I CGRYCG 1 cut(s) 722
BshFI GGCC 2 cut(s) 210, 721
BsiEI CGRYCG 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 835
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 1 cut(s) 787
BslI CCNNNNNNNGG 3 cut(s) 170, 274, 589
BsmAI GTCTC 4 cut(s) 93, 434, 748, 867
BsnI GGCC 2 cut(s) 210, 721
Bso31I GGTCTC 2 cut(s) 434, 748
BsoBI CYCGRG 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 835
Bsp143I GATC 3 cut(s) 701, 796, 822
BspACI CCGC 3 cut(s) 6, 854, 1037
BspANI GGCC 2 cut(s) 210, 721
BspCNI CTCAG 2 cut(s) 445, 847
BspOI GCTAGC 1 cut(s) 951
BspPI GGATC 1 cut(s) 791
BspQI GCTCTTC 2 cut(s) 641, 958
BspT104I TTCGAA 1 cut(s) 397
BspTI CTTAAG 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 434, 748
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 866
BsrFI RCCGGY 1 cut(s) 786
BsrI ACTGG 6 cut(s) 175, 270, 461, 504, 634, 697
BssAI RCCGGY 1 cut(s) 786
BssECI CCNNGG 3 cut(s) 250, 386, 800
BssMI GATC 3 cut(s) 701, 796, 822
BssNAI GTATAC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 250, 386
Bst1107I GTATAC 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 181, 662
Bst6I CTCTTC 3 cut(s) 96, 641, 958
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 416, 548
BstBAI YACGTR 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 3 cut(s) 234, 540, 949
BstDEI CTNAG 5 cut(s) 27, 453, 766, 834, 987
BstF5I GGATG 4 cut(s) 119, 134, 508, 1076
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 3 cut(s) 704, 799, 825
BstMAI GTCTC 4 cut(s) 93, 434, 748, 867
BstMBI GATC 3 cut(s) 701, 796, 822
BstMCI CGRYCG 1 cut(s) 722
BstMWI GCNNNNNNNGC 3 cut(s) 416, 548, 839
BstNI CCWGG 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 303, 431, 595, 988
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 701, 796
BstYI RGATCY 2 cut(s) 701, 796
BstZ17I GTATAC 1 cut(s) 658
BstZI CGGCCG 1 cut(s) 719
BsuRI GGCC 2 cut(s) 210, 721
BtgZI GCGATG 1 cut(s) 666
BtsCI GGATG 4 cut(s) 119, 134, 508, 1076
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 3 cut(s) 234, 540, 949
CfoI GCGC 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 786
Cfr13I GGNCC 2 cut(s) 372, 1034
Csp6I GTAC 1 cut(s) 168
CviAII CATG 4 cut(s) 43, 298, 589, 1128
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 5 cut(s) 27, 453, 766, 834, 987
DpnI GATC 3 cut(s) 703, 798, 824
DpnII GATC 3 cut(s) 701, 796, 822
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 719
EagI CGGCCG 1 cut(s) 719
Eam1104I CTCTTC 3 cut(s) 96, 641, 958
EarI CTCTTC 3 cut(s) 96, 641, 958
EclXI CGGCCG 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 250, 386
Eco31I GGTCTC 2 cut(s) 434, 748
Eco47I GGWCC 2 cut(s) 372, 1034
Eco52I CGGCCG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 250, 386
ErhI CCWWGG 2 cut(s) 250, 386
FaeI CATG 4 cut(s) 46, 301, 592, 1131
FatI CATG 4 cut(s) 42, 297, 588, 1127
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 5 cut(s) 317, 420, 609, 855, 977
FokI GGATG 4 cut(s) 126, 141, 515, 1063
Fsp4HI GCNGC 5 cut(s) 317, 420, 609, 855, 977
FspBI CTAG 3 cut(s) 69, 948, 1056
GlaI GCGC 1 cut(s) 858
GluI GCNGC 5 cut(s) 317, 420, 609, 855, 977
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 210, 721
HapII CCGG 1 cut(s) 787
HhaI GCGC 1 cut(s) 859
Hin1II CATG 4 cut(s) 46, 301, 592, 1131
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HinfI GANTC 4 cut(s) 86, 585, 875, 996
HpaII CCGG 1 cut(s) 787
HphI GGTGA 4 cut(s) 110, 257, 763, 1095
Hpy166II GTNNAC 3 cut(s) 265, 325, 658
Hpy188I TCNGA 6 cut(s) 80, 368, 529, 639, 837, 1001
Hpy188III TCNNGA 4 cut(s) 443, 473, 554, 1026
Hpy8I GTNNAC 3 cut(s) 265, 325, 658
HpyAV CCTTC 2 cut(s) 221, 363
HpyCH4III ACNGT 2 cut(s) 181, 662
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 7 cut(s) 152, 297, 410, 419, 518, 542, 976
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 548, 839
HpyF3I CTNAG 5 cut(s) 27, 453, 766, 834, 987
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 4 cut(s) 46, 301, 592, 1131
HspAI GCGC 1 cut(s) 857
Kzo9I GATC 3 cut(s) 701, 796, 822
LguI GCTCTTC 2 cut(s) 641, 958
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 4 cut(s) 303, 431, 595, 988
LweI GCATC 2 cut(s) 538, 1085
MaeI CTAG 3 cut(s) 69, 948, 1056
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 218, 812
MalI GATC 3 cut(s) 703, 798, 824
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 701, 796, 822
MflI RGATCY 2 cut(s) 701, 796
MhlI GDGCHC 1 cut(s) 835
MluCI AATT 5 cut(s) 11, 73, 240, 281, 405
MlyI GAGTC 4 cut(s) 95, 594, 869, 1005
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 416, 548, 839
NdeII GATC 3 cut(s) 701, 796, 822
NheI GCTAGC 1 cut(s) 947
NlaIII CATG 4 cut(s) 46, 301, 592, 1131
NmuCI GTSAC 2 cut(s) 218, 812
NspV TTCGAA 1 cut(s) 397
PciSI GCTCTTC 2 cut(s) 641, 958
PcsI WCGNNNNNNNCGW 1 cut(s) 1093
PkrI GCNGC 5 cut(s) 318, 421, 610, 856, 978
PleI GAGTC 4 cut(s) 94, 593, 869, 1004
PpsI GAGTC 4 cut(s) 94, 593, 869, 1004
Ppu21I YACGTR 1 cut(s) 574
PpuMI RGGWCCY 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 2 cut(s) 372, 1034
PspPPI RGGWCCY 1 cut(s) 372
PsuI RGATCY 2 cut(s) 701, 796
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SapI GCTCTTC 2 cut(s) 641, 958
SatI GCNGC 5 cut(s) 317, 420, 609, 855, 977
Sau3AI GATC 3 cut(s) 701, 796, 822
Sau96I GGNCC 2 cut(s) 372, 1034
SchI GAGTC 4 cut(s) 95, 594, 869, 1005
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 835
SfaNI GCATC 2 cut(s) 538, 1085
SfcI CTRYAG 1 cut(s) 180
SfuI TTCGAA 1 cut(s) 397
SinI GGWCC 2 cut(s) 372, 1034
SmlI CTYRAG 2 cut(s) 56, 1071
SmoI CTYRAG 2 cut(s) 56, 1071
Sse9I AATT 5 cut(s) 11, 73, 240, 281, 405
SsiI CCGC 3 cut(s) 6, 854, 1037
SspI AATATT 2 cut(s) 493, 687
SspMI CTAG 3 cut(s) 69, 948, 1056
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 250, 386
TaaI ACNGT 2 cut(s) 181, 662
TaiI ACGT 1 cut(s) 576
TaqI TCGA 4 cut(s) 397, 472, 821, 1025
TaqII GACCGA 1 cut(s) 904
TasI AATT 5 cut(s) 11, 73, 240, 281, 405
TauI GCSGC 1 cut(s) 857
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 2 cut(s) 218, 812
TseI GCWGC 4 cut(s) 316, 419, 608, 976
Tsp45I GTSAC 2 cut(s) 218, 812
TspDTI ATGAA 2 cut(s) 31, 416
TspGWI ACGGA 2 cut(s) 49, 1008
TspRI CASTG 1 cut(s) 201
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 372, 1034
XapI RAATTY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 3 cut(s) 69, 948, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.