Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Forward (+)

2278791 .. 2279814

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAATTGCACTCGGTGCTGCAAAGGGTCTTGCCTTTCTTCATGAAGAAGTTCAAAAACCGGTCATATACCGCGACTTCAAAACATCTAATATCCTATTAGATGCAGATTATAATGCCAAGCTTTCGGATTTCGGACTTGCGAAAGATGGCCCTGAGGGTGATAAAACTCATGTGTCCACACGAGTCATGGGAACATATGGTTATGCAGCCCCAGAGTATGTGATGACCGGACATTTGACATCAAAGAGCGATGTCTATAGTTTTGGAGTAGTTCTGCTCGAAATGATAAATGGCAGAAGATCGATGCACAAAAATAGACCAAATGGGGAGCACAATCTTGTGGAGTGGGCGAGGCAACGCTTTGGCGACAAGAAGAGGTTATTCCAGTTAATTGACCCCCGTCTTGAAGGTCATTTTTCAATTAAAGGTGCACAAAAAGCAGTCCAGCTTGCCGCCCACTGCCTCAGCCGTGACCCAAAAGCTAGGCCAATGATGAGTGAAGTTGTTGAAGTCCTAAAGCCTCTACAAAACCTCAAGGACATGGCCAGTTCTTCCTACCAATTCCAAACCATGCAAGAAGCTCGTTCCAGGTCCCTCTCAAGTTCTAAGAACGGCATCAGAACGCAGGCGGTATTCATGCCGAGAAACGGACAGCCCGTAAGGAGCTTGTCGAGCCCGAATGGTCCACCTTCTTCTCCATATTATCCTGGAAAATCGCCTAAACCTAACTCAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.51

Weight (kDa)

9.79

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 456, 632
AcoI	YGGCCR	1 cut(s)	546
AdeI	CACNNNGTG	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	56, 82, 410, 423, 512
AjnI	CCWGG	2 cut(s)	590, 709
AluBI	AGCT	5 cut(s)	124, 451, 485, 584, 669
AluI	AGCT	5 cut(s)	124, 451, 485, 584, 669
Alw21I	GWGCWC	2 cut(s)	336, 436
Alw44I	GTGCAC	1 cut(s)	432
AoxI	GGCC	3 cut(s)	151, 488, 546
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	20, 209
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AsiGI	ACCGGT	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	152, 594, 686
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	594, 686
AxyI	CCTNAGG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	680
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	336, 436
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	7, 221
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	2 cut(s)	456, 631
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	2 cut(s)	592, 711
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	3 cut(s)	21, 210, 456
BlsI	GCNGC	3 cut(s)	22, 211, 457
Bme1390I	CCNGG	2 cut(s)	592, 711
Bme18I	GGWCC	2 cut(s)	594, 686
BmgT120I	GGNCC	3 cut(s)	152, 594, 686
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	592, 711
BmsI	GCATC	3 cut(s)	94, 297, 627
BoxI	GACNNNNGTC	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	521, 586
Bsa29I	ATCGAT	1 cut(s)	305
BsaWI	WCCGGW	2 cut(s)	61, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	388, 549
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	592, 711
BseCI	ATCGAT	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMII	CTCAG	2 cut(s)	147, 481
BseNI	ACTGG	2 cut(s)	388, 549
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	7, 221
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	153, 490, 548
BshTI	ACCGGT	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	336, 436
BsiSI	CCGG	2 cut(s)	62, 231
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	153, 490, 548
Bsp1286I	GDGCHC	3 cut(s)	336, 436, 680
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	3 cut(s)	73, 456, 632
BspANI	GGCC	3 cut(s)	153, 490, 548
BspCNI	CTCAG	2 cut(s)	148, 480
BspDI	ATCGAT	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	388, 549
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	592, 711
Bst6I	CTCTTC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	453, 630
BstDEI	CTNAG	3 cut(s)	156, 467, 609
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 440, 675
BstNI	CCWGG	2 cut(s)	592, 711
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	590, 709
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	7, 221
Bsu15I	ATCGAT	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	153, 490, 548
BsuTUI	ATCGAT	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	453, 630
CciI	TCATGA	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	152, 594, 686
ClaI	ATCGAT	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	6 cut(s)	44, 173, 190, 544, 574, 640
DdeI	CTNAG	3 cut(s)	156, 467, 609
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	594, 686
Eco81I	CCTNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	590, 709
EcoT38I	GRGCYC	1 cut(s)	680
FaeI	CATG	6 cut(s)	47, 176, 193, 547, 577, 643
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	6 cut(s)	43, 172, 189, 543, 573, 639
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	21, 210, 456
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	3 cut(s)	21, 210, 456
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	3 cut(s)	21, 210, 456
HaeIII	GGCC	3 cut(s)	153, 490, 548
HapII	CCGG	2 cut(s)	62, 231
Hin1II	CATG	6 cut(s)	47, 176, 193, 547, 577, 643
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	62, 231
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	180, 434, 689
Hpy188I	TCNGA	3 cut(s)	130, 137, 623
Hpy188III	TCNNGA	2 cut(s)	44, 407
Hpy8I	GTNNAC	3 cut(s)	180, 434, 689
HpyAV	CCTTC	2 cut(s)	404, 702
HpyCH4V	TGCA	7 cut(s)	11, 23, 107, 209, 310, 434, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 440, 675
HpyF3I	CTNAG	3 cut(s)	156, 467, 609
Hsp92II	CATG	6 cut(s)	47, 176, 193, 547, 577, 643
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	331, 666
Lsp1109I	GCAGC	2 cut(s)	7, 221
LweI	GCATC	3 cut(s)	94, 297, 627
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	6 cut(s)	32, 59, 312, 388, 546, 687
MhlI	GDGCHC	3 cut(s)	336, 436, 680
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	4 cut(s)	6, 393, 423, 563
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	7 cut(s)	151, 348, 372, 476, 534, 545, 608
Mox20I	TGGCCA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	392, 426
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	2 cut(s)	62, 231
MspR9I	CCNGG	2 cut(s)	592, 711
MvaI	CCWGG	2 cut(s)	592, 711
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	17, 440, 675
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	47, 176, 193, 547, 577, 643
NlaIV	GGNNCC	1 cut(s)	596
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	1 cut(s)	473
PagI	TCATGA	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	709
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	22, 211, 457
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PpuMI	RGGWCCY	1 cut(s)	594
PshAI	GACNNNNGTC	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	590, 709
PspGI	CCWGG	2 cut(s)	590, 709
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	3 cut(s)	152, 594, 686
PspPPI	RGGWCCY	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	392, 426
SatI	GCNGC	3 cut(s)	21, 210, 456
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	3 cut(s)	152, 594, 686
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	592, 711
SduI	GDGCHC	3 cut(s)	336, 436, 680
SfaNI	GCATC	3 cut(s)	94, 297, 627
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	594, 686
SmlI	CTYRAG	2 cut(s)	536, 601
SmoI	CTYRAG	2 cut(s)	536, 601
Sse9I	AATT	4 cut(s)	6, 393, 423, 563
SsiI	CCGC	3 cut(s)	73, 456, 632
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	590, 709
TaqI	TCGA	3 cut(s)	282, 305, 674
TasI	AATT	4 cut(s)	6, 393, 423, 563
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	392, 426
Tru9I	TTAA	2 cut(s)	392, 426
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	2 cut(s)	20, 209
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	17, 32, 60, 628
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	594, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.