Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Reverse (-)

32873168 .. 32874512

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCTCGAGGGAGCTTGGAGAACCACCTATTTAGGAGGTCCCTACCTCTTCCATGGTCTATTAGAATGAAAATTGCATTGGATACGGCAAAAGGTCTTGCTTTTCTTCATGAGGAGGCAGAAAGACCTGTGTTTTATCGTGACTTTAAAACCTCCAACATCTTATTGGATGCAGATTACAATGCCAAACTTTCTGATTTTGGACTTGCCAAAGATGGCCCGGAGGGTGATAAAACTCATGTCTCCACACGTGTGATGGGAACTTATGGTTATGCAGCTCCAGAATATGTAATGACTGGACATCTTACATCGAGGAGTGATGTCTATAGTTTTGGTGTAGTTTTTAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAACTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

18.33

Weight (kDa)

6.98

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 115	2e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 118	4.4e-23	Protein kinase domain
Alba	PF01918	113 - 148	1.8e-11	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	432, 445
AcvI	CACGTG	1 cut(s)	251
AflIII	ACRYGT	2 cut(s)	248, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	4 cut(s)	15, 278, 362, 391
AluI	AGCT	4 cut(s)	15, 278, 362, 391
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	432, 445
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	217, 478
ApeKI	GCWGC	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	39, 218
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	239, 410
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	437
BarI	GAAGNNNNNNTAC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	209, 250
BceAI	ACGGC	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	490
BfmI	CTRYAG	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	39, 218
BmiI	GGNNCC	3 cut(s)	41, 439, 465
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	301, 421, 439
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	175
BseNI	ACTGG	3 cut(s)	301, 421, 439
BseRI	GAGGAG	2 cut(s)	128, 328
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	219, 480
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	219, 480
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	1 cut(s)	437
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	219, 480
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	41, 439, 465
BspPI	GGATC	2 cut(s)	432, 445
BspQI	GCTCTTC	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	301, 421, 439
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	437
BssNAI	GTATAC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	54, 352
BstBAI	YACGTR	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	440
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	219, 480
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	175
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	39, 218
CviAII	CATG	3 cut(s)	54, 110, 239
CviJI	RGCY	7 cut(s)	15, 219, 278, 350, 362, 391, 480
CviKI_1	RGCY	7 cut(s)	15, 219, 278, 350, 362, 391, 480
DpnI	GATC	1 cut(s)	439
DpnII	GATC	1 cut(s)	437
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	54, 352
EarI	CTCTTC	2 cut(s)	54, 352
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	39
Eco72I	CACGTG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 113, 242
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	3 cut(s)	53, 109, 238
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	490
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	219, 480
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	57, 113, 242
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	239, 410
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	110, 140, 281
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	2 cut(s)	470, 491
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	77, 173, 275
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	57, 113, 242
Kzo9I	GATC	1 cut(s)	437
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	12, 283, 388
LpnPI	CCDG	6 cut(s)	141, 234, 282, 294, 420, 434
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	490
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	140, 376
MalI	GATC	1 cut(s)	439
MboI	GATC	1 cut(s)	437
MboII	GAAGA	5 cut(s)	41, 98, 369, 407, 414
MflI	RGATCY	1 cut(s)	437
MluCI	AATT	3 cut(s)	72, 393, 405
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	15, 30, 57, 106, 109, 163, 217, 306, 466
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	3 cut(s)	147, 345, 396
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	437
NlaIII	CATG	3 cut(s)	57, 113, 242
NlaIV	GGNNCC	3 cut(s)	41, 439, 465
NmuCI	GTSAC	2 cut(s)	140, 376
OliI	CACNNNNGTG	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	41, 439, 465
PspPI	GGNCC	2 cut(s)	39, 218
PspPPI	RGGWCCY	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	147, 345, 396
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	437
Sau96I	GGNCC	2 cut(s)	39, 218
ScrFI	CCNGG	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	6, 470
SmoI	CTYRAG	2 cut(s)	6, 470
Sse9I	AATT	3 cut(s)	72, 393, 405
SseBI	AGGCCT	1 cut(s)	480
SspMI	CTAG	1 cut(s)	490
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	7, 311
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	72, 393, 405
Tru1I	TTAA	3 cut(s)	147, 345, 396
Tru9I	TTAA	3 cut(s)	147, 345, 396
TseFI	GTSAC	2 cut(s)	140, 376
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	140, 376
TspDTI	ATGAA	2 cut(s)	83, 98
VpaK11BI	GGWCC	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	2 cut(s)	163, 253
XhoI	CTCGAG	1 cut(s)	6
XmiI	GTMKAC	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.