Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Reverse (-)

88275468 .. 88278404

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTTAGTATTGACGCGAATGTTCAGAGGCATCCAAATATTGTCAGGTTCAAAGAGAAGTTGTTGATTCATGAGTATCTGCTGACTGCAATTCCTCCACACAACAGGCAAGATTTTTCTTCTAGCAGATATGTGGAGTCAGCTATTGTCAGTCCATGGTACAATATTGAAACGCCCACTACTACAACTATGGGATACGAGGACACCAAACAAGGACACGCGGAAGTGAATTATTTGGGGCAGTTCTATCATCCTAATCTTGTGAAACTAATTGGTTGTTGCTTGGAAGATGAGCAACACCTTTTGGTTTCCCCTGGTTCTACAAAGGGGCTGGCCGTTTTGCATGGTGCTGAAACAAGGAACAATCCAAAGCTGTCAGATTTTAGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTACTAGGGTGACGAACACATATAGATATGCAGCCCCAGAATATCTAGCCACAGATGCAATTGCATGCTCTGTTGTCATACTCCAAAGTTCCATCAAAGTACCCTTCAAGTTTGAGGGAAAAGAGACTTACACTCAAGAAGAAATTGATGTTCAACATGTAGAATGGGCAAAGCAGGTATTACTTGTTTTGGATGATATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

5.69

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccII	CGCG	2 cut(s)	17, 221
AciI	CCGC	1 cut(s)	221
AcoI	YGGCCR	2 cut(s)	333, 390
AfaI	GTAC	2 cut(s)	161, 528
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	4 cut(s)	52, 170, 535, 581
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	143, 373, 387
AluI	AGCT	3 cut(s)	143, 373, 387
Alw26I	GTCTC	2 cut(s)	430, 545
AoxI	GGCC	3 cut(s)	333, 390, 401
ApeKI	GCWGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	422, 448
BalI	TGGCCA	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	392, 527
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	430, 545
BfaI	CTAG	3 cut(s)	123, 432, 473
BfuAI	ACCTGC	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	40, 472
BpuEI	CTTGAG	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	155, 313, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	155, 313, 393
BseGI	GGATG	4 cut(s)	31, 250, 403, 625
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	17, 221
BshFI	GGCC	3 cut(s)	335, 392, 403
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	430, 545
BsmBI	CGTCTC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	335, 392, 403
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	3 cut(s)	335, 392, 403
BspFNI	CGCG	2 cut(s)	17, 221
BspHI	TCATGA	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	592
BssECI	CCNNGG	3 cut(s)	155, 313, 393
BssT1I	CCWWGG	2 cut(s)	155, 393
Bst2UI	CCWGG	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	333, 493
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	4 cut(s)	31, 250, 403, 625
BstFNI	CGCG	2 cut(s)	17, 221
BstMAI	GTCTC	2 cut(s)	430, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	495, 587
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	2 cut(s)	17, 221
BstV1I	GCAGC	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	335, 392, 403
BtgI	CCRYGG	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	4 cut(s)	31, 250, 403, 625
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	333, 493
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	160, 527
CviAII	CATG	5 cut(s)	71, 156, 344, 492, 584
CviQI	GTAC	2 cut(s)	160, 527
EaeI	YGGCCR	2 cut(s)	333, 390
Eco130I	CCWWGG	2 cut(s)	155, 393
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	155, 393
ErhI	CCWWGG	2 cut(s)	155, 393
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	5 cut(s)	74, 159, 347, 495, 587
FatI	CATG	5 cut(s)	70, 155, 343, 491, 583
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	18, 237, 410
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	3 cut(s)	123, 432, 473
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	335, 392, 403
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	74, 159, 347, 495, 587
HinfI	GANTC	2 cut(s)	67, 137
HphI	GGTGA	2 cut(s)	422, 448
Hpy188I	TCNGA	2 cut(s)	27, 379
Hpy188III	TCNNGA	2 cut(s)	71, 563
HpyAV	CCTTC	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	89, 343, 458, 485, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	74, 159, 347, 495, 587
LpnPI	CCDG	8 cut(s)	31, 91, 300, 317, 327, 393, 477, 587
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	2 cut(s)	40, 472
MaeI	CTAG	3 cut(s)	123, 432, 473
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	436
MboII	GAAGA	3 cut(s)	111, 299, 578
MfeI	CAATTG	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	6 cut(s)	90, 229, 270, 486, 570, 628
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	21, 105, 193, 535
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	2 cut(s)	17, 221
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	155
NlaIII	CATG	5 cut(s)	74, 159, 347, 495, 587
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	2 cut(s)	495, 587
PaeI	GCATGC	1 cut(s)	495
PagI	TCATGA	1 cut(s)	70
PciI	ACATGT	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	401
RsaI	GTAC	2 cut(s)	161, 528
RsaNI	GTAC	2 cut(s)	160, 527
SatI	GCNGC	1 cut(s)	459
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	8 cut(s)	50, 145, 303, 375, 389, 412, 426, 606
SfaNI	GCATC	2 cut(s)	40, 472
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	6 cut(s)	90, 229, 270, 486, 570, 628
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	2 cut(s)	40, 166
SspMI	CTAG	3 cut(s)	123, 432, 473
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	155, 393
TaiI	ACGT	1 cut(s)	426
TasI	AATT	6 cut(s)	90, 229, 270, 486, 570, 628
TfiI	GAWTC	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	59
XceI	RCATGY	2 cut(s)	495, 587
XspI	CTAG	3 cut(s)	123, 432, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.