Rorug04G0327000

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000285
Physical Location & Seq
Reverse (-)
50195449 .. 50209964
14516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0327000.1

Sequence Viewer

Length: 726 bp
ATGGCTGCTAATCATGATCATGAGAAAGATTTAGACAAGATCATCCTCAAAAGCCCAGCACTTCTCAAGTACATCCTAGAAACAAGCTGCTATCCCAGAGAACACGAGCAATTGAAGCAACTAAGGGAAGCAACTATCGAGAAATACCAGTTCTGGAGTCTTATGAATGTGCCTGTGGATGAAGGGTTACTTCTTTCCATGTTTCTGAAGATGATGAATGCAAAGAAAACATTGGAACTTGGAGTGTTTACTGGCTATTCTCTTCTCAGTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACAGCAATAGATCCAGATAAAGAGGCCTACGAGTTTGGACTGCCATTCTTTCAAAAGGCTGGAGTGGAGCATAAAATTGACTTCTTTCACTCAGATGCCTTCACAGTCTTAAATGATCTCATTAGCAGTGGCAAGGAAGAAGGGAGCTTCGATTTTGCATTTGTGGATGCGGACAAGCAAAACTATCTCAAGTATCATGAGCTTCTAATTAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGAACAGTTGCAGAACCTGAGGAAATGATGAAGGAATCATATTTAAGGGAAGGCAGAAATGATGTGATTGAAGTGAACAATTATCTAGCCGCCGATCCTCGTGTCGAATTAGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGGCGCCTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

27.39

Weight (kDa)

4.98

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 27 - 240 4.6e-82 O-methyltransferase
Methyltransf_24 PF13578 78 - 184 3.6e-11 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 714
AciI CCGC 2 cut(s) 473, 654
AclWI GGATC 2 cut(s) 308, 653
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 715
AdeI CACNNNGTG 1 cut(s) 558
AfaI GTAC 2 cut(s) 71, 271
AfiI CCNNNNNNNGG 2 cut(s) 293, 711
AgsI TTSAA 3 cut(s) 115, 356, 635
AluBI AGCT 5 cut(s) 87, 450, 505, 542, 677
AluI AGCT 5 cut(s) 87, 450, 505, 542, 677
AlwI GGATC 2 cut(s) 308, 653
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 2 cut(s) 327, 697
ApeKI GCWGC 2 cut(s) 5, 87
AspLEI GCGC 1 cut(s) 717
AsuHPI GGTGA 1 cut(s) 694
AxyI CCTNAGG 1 cut(s) 582
BanI GGYRCC 1 cut(s) 714
BauI CACGAG 2 cut(s) 104, 663
BbvI GCAGC 1 cut(s) 74
BccI CCATC 2 cut(s) 287, 689
BclI TGATCA 1 cut(s) 16
BfaI CTAG 2 cut(s) 77, 650
BfmI CTRYAG 1 cut(s) 709
BfoI RGCGCY 1 cut(s) 718
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 3 cut(s) 6, 88, 654
BlsI GCNGC 3 cut(s) 7, 89, 655
BmcAI AGTACT 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 716
BmsI GCATC 2 cut(s) 388, 460
BpmI CTGGAG 2 cut(s) 175, 384
BpuEI CTTGAG 2 cut(s) 50, 476
BsaHI GRCGYC 1 cut(s) 715
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 711
Bse1I ACTGG 2 cut(s) 148, 256
Bse21I CCTNAGG 1 cut(s) 582
BseGI GGATG 5 cut(s) 42, 72, 184, 475, 700
BseLI CCNNNNNNNGG 2 cut(s) 293, 711
BseMII CTCAG 3 cut(s) 280, 408, 573
BseNI ACTGG 2 cut(s) 148, 256
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 329, 699
BshNI GGYRCC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 293, 711
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 329, 699
Bsp143I GATC 5 cut(s) 16, 39, 313, 418, 658
BspACI CCGC 2 cut(s) 473, 654
BspANI GGCC 2 cut(s) 329, 699
BspCNI CTCAG 3 cut(s) 279, 407, 574
BspHI TCATGA 3 cut(s) 13, 19, 499
BspLI GGNNCC 1 cut(s) 716
BspMAI CTGCAG 1 cut(s) 713
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 2 cut(s) 308, 653
BspT107I GGYRCC 1 cut(s) 714
BsrI ACTGG 2 cut(s) 148, 256
BssMI GATC 5 cut(s) 16, 39, 313, 418, 658
BssNI GRCGYC 1 cut(s) 715
BssSI CACGAG 2 cut(s) 104, 663
Bst2BI CACGAG 2 cut(s) 104, 663
Bst4CI ACNGT 3 cut(s) 409, 558, 571
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 715
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 4 cut(s) 122, 266, 394, 582
BstF5I GGATG 5 cut(s) 42, 72, 184, 475, 700
BstH2I RGCGCY 1 cut(s) 718
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 5 cut(s) 19, 42, 316, 421, 661
BstMBI GATC 5 cut(s) 16, 39, 313, 418, 658
BstMWI GCNNNNNNNGC 2 cut(s) 115, 287
BstSFI CTRYAG 1 cut(s) 709
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 2 cut(s) 329, 699
BtsCI GGATG 5 cut(s) 42, 72, 184, 475, 700
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 436, 554
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 3 cut(s) 13, 19, 499
CfoI GCGC 1 cut(s) 717
Csp6I GTAC 2 cut(s) 70, 270
CviAII CATG 4 cut(s) 14, 20, 199, 500
CviQI GTAC 2 cut(s) 70, 270
DdeI CTNAG 4 cut(s) 122, 266, 394, 582
DinI GGCGCC 1 cut(s) 716
DpnI GATC 5 cut(s) 18, 41, 315, 420, 660
DpnII GATC 5 cut(s) 16, 39, 313, 418, 658
DraIII CACNNNGTG 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 716
EheI GGCGCC 1 cut(s) 716
FaeI CATG 4 cut(s) 17, 23, 202, 503
FaiI YATR 8 cut(s) 15, 21, 164, 200, 375, 501, 539, 604
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 4 cut(s) 13, 19, 198, 499
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 6, 88, 654
FokI GGATG 5 cut(s) 29, 59, 191, 482, 707
Fsp4HI GCNGC 3 cut(s) 6, 88, 654
FspBI CTAG 2 cut(s) 77, 650
GlaI GCGC 1 cut(s) 716
GluI GCNGC 3 cut(s) 6, 88, 654
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 175, 384
HaeII RGCGCY 1 cut(s) 718
HaeIII GGCC 2 cut(s) 329, 699
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 4 cut(s) 17, 23, 202, 503
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HinfI GANTC 3 cut(s) 157, 534, 599
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 2 cut(s) 249, 640
Hpy188I TCNGA 2 cut(s) 207, 397
Hpy188III TCNNGA 6 cut(s) 14, 20, 139, 154, 317, 500
Hpy8I GTNNAC 2 cut(s) 249, 640
HpyAV CCTTC 5 cut(s) 176, 412, 437, 589, 608
HpyCH4III ACNGT 3 cut(s) 409, 558, 571
HpyCH4V TGCA 5 cut(s) 221, 281, 461, 575, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 287
HpyF3I CTNAG 4 cut(s) 122, 266, 394, 582
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 4 cut(s) 17, 23, 202, 503
HspAI GCGC 1 cut(s) 715
KasI GGCGCC 1 cut(s) 714
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 39, 313, 418, 658
LmnI GCTCC 2 cut(s) 370, 447
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 388, 460
MaeI CTAG 2 cut(s) 77, 650
MaeIII GTNAC 1 cut(s) 186
MalI GATC 5 cut(s) 18, 41, 315, 420, 660
MboI GATC 5 cut(s) 16, 39, 313, 418, 658
MboII GAAGA 3 cut(s) 220, 254, 452
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 313
MluCI AATT 5 cut(s) 110, 378, 510, 643, 671
Mly113I GGCGCC 1 cut(s) 715
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 6 cut(s) 56, 319, 577, 672, 710, 716
MseI TTAA 4 cut(s) 413, 513, 522, 608
MslI CAYNNNNRTG 2 cut(s) 18, 396
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 115, 287
NarI GGCGCC 1 cut(s) 715
NdeII GATC 5 cut(s) 16, 39, 313, 418, 658
NlaIII CATG 4 cut(s) 17, 23, 202, 503
NlaIV GGNNCC 1 cut(s) 716
PagI TCATGA 3 cut(s) 13, 19, 499
PceI AGGCCT 1 cut(s) 329
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 534, 599
PkrI GCNGC 3 cut(s) 7, 89, 655
PleI GAGTC 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 713
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 71, 271
RsaNI GTAC 2 cut(s) 70, 270
RseI CAYNNNNRTG 2 cut(s) 18, 396
SaqAI TTAA 4 cut(s) 413, 513, 522, 608
SatI GCNGC 3 cut(s) 6, 88, 654
Sau3AI GATC 5 cut(s) 16, 39, 313, 418, 658
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 166
SetI ASST 8 cut(s) 89, 289, 452, 507, 528, 544, 583, 679
SfaNI GCATC 2 cut(s) 388, 460
SfcI CTRYAG 1 cut(s) 709
SfoI GGCGCC 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 18, 396
SmlI CTYRAG 2 cut(s) 65, 491
SmoI CTYRAG 2 cut(s) 65, 491
Sse9I AATT 5 cut(s) 110, 378, 510, 643, 671
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 2 cut(s) 473, 654
SspDI GGCGCC 1 cut(s) 714
SspMI CTAG 2 cut(s) 77, 650
StuI AGGCCT 1 cut(s) 329
TaaI ACNGT 3 cut(s) 409, 558, 571
TaqI TCGA 3 cut(s) 138, 453, 669
TasI AATT 5 cut(s) 110, 378, 510, 643, 671
TatI WGTACW 2 cut(s) 69, 269
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 2 cut(s) 534, 599
Tru1I TTAA 4 cut(s) 413, 513, 522, 608
Tru9I TTAA 4 cut(s) 413, 513, 522, 608
TscAI CASTG 2 cut(s) 436, 561
TseI GCWGC 2 cut(s) 5, 87
TspDTI ATGAA 4 cut(s) 179, 195, 230, 608
TspRI CASTG 2 cut(s) 436, 561
XspI CTAG 2 cut(s) 77, 650
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.