Rmu_co8366321.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8366321.1
OG0000285
Physical Location & Seq
Reverse (-)
2 .. 665
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8366321.1_g000001.1.cds

Sequence Viewer

Length: 664 bp
atggcttgccacaaagtagcagctgcttcctttcaacttctttctcttgttagtttccttcttttcttaagtccagaagccacaacaatatttgccaactccaatactgtcgatgatgggaggtccaatgtggcttgcattgaggaagagaggaaggcccttcttgaattcaagcaaggtcttcaagatcctttgcttgcgcttcattcttgggttggcaaagactgctgcaactggcatggcatagtctgcaacaaccatacaggtaacatcatcgagcttcgtcttttggatacaaaaatctctggtacactctcagtgtcaataggaagtctttcgcatttggaaaccttgattctttccaaaaattcgttctatggtccacttccgatatcaatcggaaatctttcacatttgcagaccttggatctttctttcaattcaatctctggtctatttccgattgatatcggaaatcttccaaatttgcagaatttggaccttagctcaaactcaatctccggtccacttccaacatcgattggaaatcttttaaatttgcagagcttggaccttagttttaactcaatctctggtccacttccaacaccgattggaaatctttcaaatttgcagaacttggacctatggaataacccaatct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

221

Amino Acids

23.8

Weight (kDa)

5.0

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 182, 435
AcsI RAATTY 6 cut(s) 167, 367, 484, 493, 556, 628
AfaI GTAC 1 cut(s) 310
AflII CTTAAG 1 cut(s) 67
AgsI TTSAA 7 cut(s) 35, 167, 172, 185, 439, 444, 627
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 4 cut(s) 23, 280, 507, 567
AluI AGCT 4 cut(s) 23, 280, 507, 567
AlwI GGATC 2 cut(s) 182, 435
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 20, 23, 228
ApoI RAATTY 6 cut(s) 167, 367, 484, 493, 556, 628
Asp700I GAANNNNTTC 3 cut(s) 334, 406, 622
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 8 cut(s) 123, 157, 380, 499, 524, 571, 596, 643
AvaII GGWCC 7 cut(s) 123, 380, 499, 524, 571, 596, 643
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 10, 32, 215
BccI CCATC 1 cut(s) 110
BciVI GTATCC 1 cut(s) 286
BfrI CTTAAG 1 cut(s) 67
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 3 cut(s) 21, 24, 229
BlsI GCNGC 3 cut(s) 22, 25, 230
Bme18I GGWCC 7 cut(s) 123, 380, 499, 524, 571, 596, 643
BmgT120I GGNCC 8 cut(s) 123, 157, 380, 499, 524, 571, 596, 643
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 503
Bsa29I ATCGAT 1 cut(s) 539
BsaBI GATNNNNATC 2 cut(s) 395, 467
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bse1I ACTGG 1 cut(s) 239
Bse8I GATNNNNATC 2 cut(s) 395, 467
BseCI ATCGAT 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 423
BseJI GATNNNNATC 2 cut(s) 395, 467
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 10, 32, 215
BshFI GGCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 539
BsiSI CCGG 1 cut(s) 522
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 187, 427
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 329
BspDI ATCGAT 1 cut(s) 539
BspPI GGATC 2 cut(s) 182, 435
BspTI CTTAAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 187, 427
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 67
BstAPI GCANNNNNTGC 2 cut(s) 225, 249
BstC8I GCNNGC 3 cut(s) 7, 136, 198
BstDEI CTNAG 3 cut(s) 316, 503, 575
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 190, 430
BstMBI GATC 2 cut(s) 187, 427
BstMWI GCNNNNNNNGC 2 cut(s) 225, 249
BstV1I GCAGC 3 cut(s) 10, 32, 215
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 187, 427
BstYI RGATCY 2 cut(s) 187, 427
Bsu15I ATCGAT 1 cut(s) 539
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 539
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 3 cut(s) 7, 136, 198
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 8 cut(s) 123, 157, 380, 499, 524, 571, 596, 643
ClaI ATCGAT 1 cut(s) 539
Csp6I GTAC 1 cut(s) 309
CviAII CATG 1 cut(s) 239
CviJI RGCY 8 cut(s) 5, 23, 80, 134, 158, 280, 507, 567
CviKI_1 RGCY 8 cut(s) 5, 23, 80, 134, 158, 280, 507, 567
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 316, 503, 575
DpnI GATC 2 cut(s) 189, 429
DpnII GATC 2 cut(s) 187, 427
DraI TTTAAA 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 423
Eco32I GATATC 2 cut(s) 393, 469
Eco47I GGWCC 7 cut(s) 123, 380, 499, 524, 571, 596, 643
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 167
EcoRV GATATC 2 cut(s) 393, 469
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 1 cut(s) 242
FaiI YATR 5 cut(s) 240, 245, 261, 378, 649
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 21, 24, 229
Fsp4HI GCNGC 3 cut(s) 21, 24, 229
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 21, 24, 229
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 522
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 522
Hpy166II GTNNAC 4 cut(s) 311, 383, 527, 599
Hpy188I TCNGA 4 cut(s) 390, 401, 462, 473
Hpy188III TCNNGA 3 cut(s) 74, 164, 185
Hpy8I GTNNAC 4 cut(s) 311, 383, 527, 599
HpyAV CCTTC 3 cut(s) 68, 148, 170
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 138, 231, 252, 418, 490, 562, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 249
HpyF3I CTNAG 3 cut(s) 316, 503, 575
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 187, 427
LpnPI CCDG 7 cut(s) 87, 220, 249, 291, 435, 535, 579
Lsp1109I GCAGC 3 cut(s) 10, 32, 215
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 189, 429
MboI GATC 2 cut(s) 187, 427
MboII GAAGA 3 cut(s) 158, 173, 470
MflI RGATCY 2 cut(s) 187, 427
MluCI AATT 7 cut(s) 167, 367, 439, 484, 493, 556, 628
MmeI TCCRAC 2 cut(s) 557, 629
MnlI CCTC 3 cut(s) 114, 136, 144
MroXI GAANNNNTTC 3 cut(s) 334, 406, 622
MseI TTAA 3 cut(s) 68, 554, 582
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 225, 249
NdeII GATC 2 cut(s) 187, 427
NlaIII CATG 1 cut(s) 242
PdmI GAANNNNTTC 3 cut(s) 334, 406, 622
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 3 cut(s) 22, 25, 230
PspPI GGNCC 8 cut(s) 123, 157, 380, 499, 524, 571, 596, 643
PsuI RGATCY 2 cut(s) 187, 427
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 3 cut(s) 68, 554, 582
SatI GCNGC 3 cut(s) 21, 24, 229
Sau3AI GATC 2 cut(s) 187, 427
Sau96I GGNCC 8 cut(s) 123, 157, 380, 499, 524, 571, 596, 643
SinI GGWCC 7 cut(s) 123, 380, 499, 524, 571, 596, 643
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 7 cut(s) 167, 367, 439, 484, 493, 556, 628
SspI AATATT 1 cut(s) 90
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 111, 276, 539
TasI AATT 7 cut(s) 167, 367, 439, 484, 493, 556, 628
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 68, 554, 582
Tru9I TTAA 3 cut(s) 68, 554, 582
TscAI CASTG 1 cut(s) 324
TseI GCWGC 3 cut(s) 20, 23, 228
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 324
Vha464I CTTAAG 1 cut(s) 67
VpaK11BI GGWCC 7 cut(s) 123, 380, 499, 524, 571, 596, 643
XapI RAATTY 6 cut(s) 167, 367, 484, 493, 556, 628
XmnI GAANNNNTTC 3 cut(s) 334, 406, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.