Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035791.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

1501 .. 1998

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgaacaggccctaccatgatcttcagcatctggacctaaatgtaaaaggagtaggatatgaatatgccagttatctcttaaggcttgtaaacagcatagacatttcaagcaataatctatggggtgaaataccagaagagataacgaatctttcctatttgggtagcttgagtttatctccgaaccaattgacaggaaatatcccagagggtataggaaagttacagctgttagaaactcttgacctctcaagtaaccatcttcacggtccaattcctctcagcatgacctccatgacttctctgagcaaattaaacttgtcctataacaacttgtcagggccaattccatcagccaaccaattccagcccttcaatgaccctgccatgtataaaggaaactctggactttgtggggcgccattgccaacacaatgctcaacatcggataatgatgattcgggacaagaagaagaagaagatgatgatgatcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

165

Amino Acids

18.06

Weight (kDa)

4.24

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	108, 376
AluBI	AGCT	2 cut(s)	168, 229
AluI	AGCT	2 cut(s)	168, 229
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	8, 341
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	4 cut(s)	9, 34, 269, 341
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	34, 269
BanI	GGYRCC	1 cut(s)	418
BccI	CCATC	2 cut(s)	267, 358
BfoI	RGCGCY	1 cut(s)	422
BfrI	CTTAAG	1 cut(s)	79
Bme18I	GGWCC	2 cut(s)	34, 269
BmgT120I	GGNCC	4 cut(s)	9, 34, 269, 341
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	2 cut(s)	190, 235
Bsa29I	ATCGAT	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	295, 296
BseNI	ACTGG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	10, 343
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	10, 343
Bsp143I	GATC	2 cut(s)	19, 490
BspANI	GGCC	2 cut(s)	10, 343
BspCNI	CTCAG	2 cut(s)	294, 297
BspDI	ATCGAT	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	19, 490
BssNI	GRCGYC	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	419
BstAFI	CTTAAG	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	281, 305
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	22, 493
BstMBI	GATC	2 cut(s)	19, 490
Bsu15I	ATCGAT	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	10, 343
BsuTUI	ATCGAT	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	4 cut(s)	9, 34, 269, 341
ClaI	ATCGAT	1 cut(s)	493
CviAII	CATG	4 cut(s)	17, 286, 295, 388
CviJI	RGCY	7 cut(s)	10, 85, 168, 229, 343, 356, 370
CviKI_1	RGCY	7 cut(s)	10, 85, 168, 229, 343, 356, 370
DdeI	CTNAG	2 cut(s)	281, 305
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	2 cut(s)	21, 492
DpnII	GATC	2 cut(s)	19, 490
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	34, 269
Eco57I	CTGAAG	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
FaeI	CATG	4 cut(s)	20, 289, 298, 391
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	4 cut(s)	16, 285, 294, 387
GlaI	GCGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	10, 343
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	20, 289, 298, 391
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	148, 458
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	183, 306, 448
Hpy188III	TCNNGA	4 cut(s)	32, 242, 405, 462
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	281, 305
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	20, 289, 298, 391
HspAI	GCGC	1 cut(s)	419
KasI	GGCGCC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	19, 490
LpnPI	CCDG	9 cut(s)	17, 82, 147, 180, 219, 324, 380, 390, 396
LweI	GCATC	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	222, 254
MalI	GATC	2 cut(s)	21, 492
MboI	GATC	2 cut(s)	19, 490
MboII	GAAGA	7 cut(s)	14, 149, 254, 482, 485, 488, 491
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	5 cut(s)	188, 273, 311, 345, 362
Mly113I	GGCGCC	1 cut(s)	419
MnlI	CCTC	4 cut(s)	202, 257, 288, 301
MseI	TTAA	2 cut(s)	80, 314
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	188
NarI	GGCGCC	1 cut(s)	419
NdeII	GATC	2 cut(s)	19, 490
NlaIII	CATG	4 cut(s)	20, 289, 298, 391
NlaIV	GGNNCC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	148, 458
PluTI	GGCGCC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	4 cut(s)	9, 34, 269, 341
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	80, 314
Sau3AI	GATC	2 cut(s)	19, 490
Sau96I	GGNCC	4 cut(s)	9, 34, 269, 341
SetI	ASST	5 cut(s)	39, 170, 231, 249, 293
SfaNI	GCATC	1 cut(s)	37
SfoI	GGCGCC	1 cut(s)	420
SinI	GGWCC	2 cut(s)	34, 269
SmlI	CTYRAG	3 cut(s)	79, 169, 250
SmoI	CTYRAG	3 cut(s)	79, 169, 250
Sse9I	AATT	5 cut(s)	188, 273, 311, 345, 362
SspDI	GGCGCC	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	493
TasI	AATT	5 cut(s)	188, 273, 311, 345, 362
TfiI	GAWTC	2 cut(s)	148, 458
Tru1I	TTAA	2 cut(s)	80, 314
Tru9I	TTAA	2 cut(s)	80, 314
TspDTI	ATGAA	2 cut(s)	17, 75
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	34, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.