RchiOBHm_Chr1g0354321

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
47323246 .. 47323980
735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57989

Sequence Viewer

Length: 735 bp
ATGGCTTGCCACAAAGTAGCAGCTGCTCCCTTTCAACTTCTTTCTCTTGTCAGTTTCCTTCTTTTCTTAAATCCATATTCTTCTATTTTCCTTGAAGCCACAACAATATTTGCCAACTCCAATACTGTCAATGATGAGAGGTCCAATGTGGCTTGCATTGAGGAAGAGAGGAAGGCCCTCCTTGAATTCAAGCAAGGACTTCAAGATCCTTTGTTTGAGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAACCAAACAGGTAACATCATCGAGCTTCGTCTTTTGGATACACAAATCTCTGGTACACTTTCAATGTCAATAGGCAGTCTTTCGGATTTGGAGACCTTGATTCTTTTTAACAATTCGTTCTCTGGCCCACTTCCGATATCAATCGAAAATCTTTCAGATCTGCGGACCTTGAACCTTTCTTTCAATTTCATCTCCGGTCCACTTCCGACATCGATCGGAAATCTTTCAAATTTGCAGAGCTTGTCCCTTTCTTCAAACAAAATTTTCGGTCCACTTCCGACATCTATCGGAAGTCTTTCAAATTTGCAGAGCTTGGACCTTTTGACAGGACCCGACCCAGGAATCACCCCAATTACCTGGATACGAGCCTGCGGGGCCCACGTTAAGCGAAATCCTACCGAAAATTCGGCAGAACCTCCCCTAAATATGGGCTACCCAAAAATTTCACAAACCTGGACATGA

Protein Analysis

244

Amino Acids

26.59

Weight (kDa)

5.01

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 54 - 91 2.3e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 84 - 175 2.6e-08 Leucine-rich repeat region
LRR_14 PF23598 139 - 198 8.6e-08 Leucine-rich repeat region
LRR_8 PF13855 145 - 198 9.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 436, 645
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 6 cut(s) 185, 502, 534, 574, 676, 714
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 611, 700
AjnI CCWGG 3 cut(s) 610, 629, 725
AluBI AGCT 5 cut(s) 23, 220, 298, 513, 585
AluI AGCT 5 cut(s) 23, 220, 298, 513, 585
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 174, 397, 648
ApaI GGGCCC 1 cut(s) 652
ApeKI GCWGC 3 cut(s) 20, 23, 246
ApoI RAATTY 6 cut(s) 185, 502, 534, 574, 676, 714
Asp700I GAANNNNTTC 2 cut(s) 496, 568
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 6 cut(s) 141, 438, 470, 542, 589, 602
BaeGI GKGCMC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 652
BbvI GCAGC 3 cut(s) 10, 32, 233
BciT130I CCWGG 3 cut(s) 612, 631, 727
BciVI GTATCC 2 cut(s) 304, 627
BcoDI GTCTC 1 cut(s) 359
BfuI GTATCC 2 cut(s) 304, 627
BglI GCCNNNNNGGC 1 cut(s) 647
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 21, 24, 247
BlsI GCNGC 3 cut(s) 22, 25, 248
Bme1390I CCNGG 3 cut(s) 612, 631, 727
Bme18I GGWCC 6 cut(s) 141, 438, 470, 542, 589, 602
BmiI GGNNCC 3 cut(s) 604, 649, 650
BmrFI CCNGG 3 cut(s) 612, 631, 727
Bsa29I ATCGAT 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 467
Bsc4I CCNNNNNNNGG 2 cut(s) 611, 700
Bse1I ACTGG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 3 cut(s) 612, 631, 727
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 610
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 611, 700
BseNI ACTGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 3 cut(s) 10, 32, 233
Bsh1285I CGRYCG 1 cut(s) 489
BshFI GGCC 3 cut(s) 176, 399, 650
BshVI ATCGAT 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 489
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 611, 700
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 3 cut(s) 176, 399, 650
Bso31I GGTCTC 1 cut(s) 359
Bsp120I GGGCCC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 3 cut(s) 205, 430, 486
BspACI CCGC 2 cut(s) 436, 645
BspANI GGCC 3 cut(s) 176, 399, 650
BspDI ATCGAT 1 cut(s) 485
BspLI GGNNCC 3 cut(s) 604, 649, 650
BspPI GGATC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 3 cut(s) 205, 430, 486
Bst2UI CCWGG 3 cut(s) 612, 631, 727
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 2 cut(s) 243, 267
BstC8I GCNNGC 3 cut(s) 7, 154, 643
BstKTI GATC 3 cut(s) 208, 433, 489
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 205, 430, 486
BstMCI CGRYCG 1 cut(s) 489
BstMWI GCNNNNNNNGC 3 cut(s) 243, 267, 647
BstNI CCWGG 3 cut(s) 612, 631, 727
BstSCI CCNGG 3 cut(s) 610, 629, 725
BstSLI GKGCMC 1 cut(s) 652
BstV1I GCAGC 3 cut(s) 10, 32, 233
BstX2I RGATCY 2 cut(s) 205, 430
BstXI CCANNNNNNTGG 1 cut(s) 630
BstYI RGATCY 2 cut(s) 205, 430
Bsu15I ATCGAT 1 cut(s) 485
BsuI GTATCC 2 cut(s) 304, 627
BsuRI GGCC 3 cut(s) 176, 399, 650
BsuTUI ATCGAT 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 7, 154, 643
ClaI ATCGAT 1 cut(s) 485
Csp6I GTAC 1 cut(s) 327
CviAII CATG 2 cut(s) 257, 732
CviQI GTAC 1 cut(s) 327
DpnI GATC 3 cut(s) 207, 432, 488
DpnII GATC 3 cut(s) 205, 430, 486
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 6 cut(s) 141, 438, 470, 542, 589, 602
EcoO109I RGGNCCY 3 cut(s) 175, 602, 648
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 3 cut(s) 610, 629, 725
EcoRV GATATC 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 652
FaeI CATG 2 cut(s) 260, 735
FaiI YATR 5 cut(s) 76, 258, 263, 701, 733
FaqI GGGAC 1 cut(s) 502
FatI CATG 2 cut(s) 256, 731
FauI CCCGC 1 cut(s) 638
Fnu4HI GCNGC 3 cut(s) 21, 24, 247
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 3 cut(s) 21, 24, 247
GluI GCNGC 3 cut(s) 21, 24, 247
HaeIII GGCC 3 cut(s) 176, 399, 650
HapII CCGG 1 cut(s) 468
Hin1II CATG 2 cut(s) 260, 735
HinfI GANTC 2 cut(s) 373, 615
HpaII CCGG 1 cut(s) 468
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 3 cut(s) 329, 473, 545
Hpy188I TCNGA 7 cut(s) 358, 408, 430, 480, 491, 552, 563
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 329, 473, 545
HpyAV CCTTC 2 cut(s) 68, 166
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 5 cut(s) 156, 249, 270, 508, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 267, 647
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 2 cut(s) 260, 735
Kzo9I GATC 3 cut(s) 205, 430, 486
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 10, 32, 233
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 207, 432, 488
MboI GATC 3 cut(s) 205, 430, 486
MboII GAAGA 3 cut(s) 72, 176, 516
MflI RGATCY 2 cut(s) 205, 430
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 9 cut(s) 185, 385, 457, 502, 534, 574, 624, 676, 714
MmeI TCCRAC 2 cut(s) 503, 575
MnlI CCTC 5 cut(s) 132, 154, 162, 188, 699
MroXI GAANNNNTTC 2 cut(s) 496, 568
MseI TTAA 3 cut(s) 68, 381, 657
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 612, 631, 727
MvaI CCWGG 3 cut(s) 612, 631, 727
MwoI GCNNNNNNNGC 3 cut(s) 243, 267, 647
NdeII GATC 3 cut(s) 205, 430, 486
NlaIII CATG 2 cut(s) 260, 735
NlaIV GGNNCC 3 cut(s) 604, 649, 650
PdmI GAANNNNTTC 2 cut(s) 496, 568
PfeI GAWTC 2 cut(s) 373, 615
PkrI GCNGC 3 cut(s) 22, 25, 248
Ple19I CGATCG 1 cut(s) 489
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 610, 629, 725
PspGI CCWGG 3 cut(s) 610, 629, 725
PspN4I GGNNCC 3 cut(s) 604, 649, 650
PspOMI GGGCCC 1 cut(s) 648
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 2 cut(s) 205, 430
PvuI CGATCG 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SaqAI TTAA 3 cut(s) 68, 381, 657
SatI GCNGC 3 cut(s) 21, 24, 247
Sau3AI GATC 3 cut(s) 205, 430, 486
ScrFI CCNGG 3 cut(s) 612, 631, 727
SduI GDGCHC 1 cut(s) 652
SinI GGWCC 6 cut(s) 141, 438, 470, 542, 589, 602
Sse9I AATT 9 cut(s) 185, 385, 457, 502, 534, 574, 624, 676, 714
SsiI CCGC 2 cut(s) 436, 645
SspI AATATT 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 610, 629, 725
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 294, 417, 485
TaqII GACCGA 1 cut(s) 530
TasI AATT 9 cut(s) 185, 385, 457, 502, 534, 574, 624, 676, 714
TfiI GAWTC 2 cut(s) 373, 615
Tru1I TTAA 3 cut(s) 68, 381, 657
Tru9I TTAA 3 cut(s) 68, 381, 657
TseI GCWGC 3 cut(s) 20, 23, 246
TspDTI ATGAA 2 cut(s) 212, 451
VpaK11BI GGWCC 6 cut(s) 141, 438, 470, 542, 589, 602
XapI RAATTY 6 cut(s) 185, 502, 534, 574, 676, 714
XmnI GAANNNNTTC 2 cut(s) 496, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.