Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

50805478 .. 50805879

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTCATTATCACTCATGGCAGGGTAAGGACTTCCACCAAAATTAATGGCTTGGACACTACAAGTCTTGAAAAAGGGCACTTTTACGGAGAACAACTTTTTGAATACTGGATTTCGAATTCTCCAATCAAATCGTCATCAAGCCCTGCGTTACCCTTGTCGGAGAAGACCATCGTGGCCCAGACAGATGTTCAAGTGTTCGTCATAAGAGCCAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCAGAGAAATGGAAACCTTGGGCAGCAAAGACTGTACAAGCAGCATTTCGCAGGCACATTGCTTTAGCCGTCGATTTGAACCCAGATAGACAGGAGAGAAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

133

Amino Acids

15.43

Weight (kDa)

9.75

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	118, 239
AfaI	GTAC	2 cut(s)	275, 330
AgsI	TTSAA	4 cut(s)	71, 104, 194, 373
AjnI	CCWGG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	317, 335
ApoI	RAATTY	2 cut(s)	118, 239
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	178, 278
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	329, 347
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	318, 336
BlsI	GCNGC	2 cut(s)	319, 337
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	178, 278
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	311
BsaXI	ACNNNNNCTCC	3 cut(s)	257, 287, 380
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	329, 347
BshFI	GGCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	281
BsnI	GGCC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	328
BspANI	GGCC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	278, 328
Bst6I	CTCTTC	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	329, 347
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	178, 278
CpoI	CGGWCCG	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	274, 329
CspI	CGGWCCG	1 cut(s)	278
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	6 cut(s)	51, 144, 179, 212, 250, 362
CviKI_1	RGCY	6 cut(s)	51, 144, 179, 212, 250, 362
CviQI	GTAC	2 cut(s)	274, 329
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	1 cut(s)	20
FaiI	YATR	3 cut(s)	18, 206, 400
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	318, 336
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	318, 336
GluI	GCNGC	2 cut(s)	318, 336
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	20
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	163, 298
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	2 cut(s)	278, 328
Hsp92II	CATG	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	329, 347
MaeIII	GTNAC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	178, 244
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	6 cut(s)	42, 118, 218, 225, 239, 292
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	256, 279
MseI	TTAA	2 cut(s)	45, 291
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NlaIII	CATG	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	319, 337
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	178, 278
RsaI	GTAC	2 cut(s)	275, 330
RsaNI	GTAC	2 cut(s)	274, 329
Rsr2I	CGGWCCG	1 cut(s)	278
RsrII	CGGWCCG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	45, 291
SatI	GCNGC	2 cut(s)	318, 336
Sau96I	GGNCC	2 cut(s)	178, 278
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	3 cut(s)	290, 313, 398
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	6 cut(s)	42, 118, 218, 225, 239, 292
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	278, 328
TaqI	TCGA	2 cut(s)	116, 366
TasI	AATT	6 cut(s)	42, 118, 218, 225, 239, 292
TatI	WGTACW	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	45, 291
Tru9I	TTAA	2 cut(s)	45, 291
TseI	GCWGC	2 cut(s)	317, 335
TspDTI	ATGAA	2 cut(s)	231, 244
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	2 cut(s)	118, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.