Rorug04G0333600

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
50813311 .. 50815573
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0333600.1

Sequence Viewer

Length: 1131 bp
ATGAGCTATAGGAGTAATAATCAGATGGCACGGATACGACCGAGTTTTGATAAAGAAGCAAATTATGCTGATTGCAAAGATGATAACCCTGTTTTGAAAGCAGTGTGTTCTTATTATGAAGTTCTGGGTTGCAAGACTAGAATTCTTGGCCCCAAAGAGCACTGTCTTCAGACGATTAACTACATCTTTCTTGTTTTCTGCTTTATTGCTCTCGCTCTGGATCCTTTATTCTGTTACATCCTTATCGTCAACGACGAGAACAAGTGCCTTAGATTGGACAAAACATACTTCTGTGCTGCCCTCCGTGATGGTACTATTGTTACTCCTCATTCATATCCAAAAATCATCCGAAAACATAAATCCTTTCGAAAAAATCATAAACTGGCACCAACGAGTAAATGGGAATCCTTCTTGTCGTACCTTTTCTTCCCGCTAGTCGACATATTTGTAATTCTTCCACTCCCACAGGTACTGGCTTTTGCTGTCATTCCAAAATTAAATGAGTCAAGGGTTTTTGATGCAACGCAGACACTCAAATCTGTGTTTCTCTTTCAATACGGGCTAAGGGTTATTCGAATCTGCTCCTTGTTGAAAAATGTTACAAGGGCATCTGTCAATATCCTCTCTGAGACTACATGGGCTAATCTCTCCTTTTTTCTACTTGCTAGTCATGTGCTTGGAGCTTTTTGGTATTTATTTTCCATAGAAAGGAAAACAACTTGTTGGGTAGAAGTATGTAAGAATCAAGGTGTTGCTTGTTCTTTGTATTGCGATGACACCATGGTACTTAACCCACTCCAACTGATCAATGACTACTCTTGCTCTACAAAGACCAATAACACAGCCTTTGATTATGGAATATACCTTCATGCTCTCGAATCGGGTGTCGTCTATTCAGATAATTTTCTACAAAAGATTTCTCTCTGCTTATGGTGGGGACTGCAAAACATAAGCTCCTTTGGTCAAAGTCTCAAAACAAGTACCTATGTGTGGGAGATCTACTTTTCAATTGTCGTTTCAATTTCTGGCTTGGTACTGTTTGCATTATTTATTGGAAATATACAGACGTACTTGAATTCGAAAGCTGAAAGAGTGAAGGAAATGAAATCGATCGAACGGGCAAGAGATTGA

Protein Analysis

376

Amino Acids

43.18

Weight (kDa)

8.85

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 54 - 364 9e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 431
AclWI GGATC 2 cut(s) 215, 228
AcsI RAATTY 2 cut(s) 141, 1075
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 7 cut(s) 313, 419, 471, 786, 982, 1035, 1070
AfiI CCNNNNNNNGG 3 cut(s) 274, 708, 990
AgsI TTSAA 6 cut(s) 97, 554, 592, 1008, 1020, 1075
AluBI AGCT 4 cut(s) 6, 683, 954, 1085
AluI AGCT 4 cut(s) 6, 683, 954, 1085
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 623, 974
AlwI GGATC 2 cut(s) 215, 228
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 141, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspS9I GGNCC 1 cut(s) 149
AsuII TTCGAA 3 cut(s) 367, 574, 1079
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 385
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 19, 302
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 623, 974
BfaI CTAG 3 cut(s) 138, 434, 666
BfmI CTRYAG 1 cut(s) 7
BfuI GTATCC 1 cut(s) 27
BglII AGATCT 1 cut(s) 996
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 151, 222, 387
BmsI GCATC 2 cut(s) 508, 617
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 563
Bpu14I TTCGAA 3 cut(s) 367, 574, 1079
Bsa29I ATCGAT 1 cut(s) 1109
BsaJI CCNNGG 1 cut(s) 780
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 708, 990
Bse1I ACTGG 2 cut(s) 387, 477
BseCI ATCGAT 1 cut(s) 1109
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 2 cut(s) 237, 345
BseLI CCNNNNNNNGG 3 cut(s) 274, 708, 990
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 387, 477
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 283
Bsh1285I CGRYCG 2 cut(s) 41, 1113
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 385
BshVI ATCGAT 1 cut(s) 1109
BsiEI CGRYCG 2 cut(s) 41, 1113
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 3 cut(s) 274, 708, 990
BsmAI GTCTC 2 cut(s) 623, 974
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 1 cut(s) 150
Bsp119I TTCGAA 3 cut(s) 367, 574, 1079
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 4 cut(s) 220, 804, 996, 1110
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 619
BspDI ATCGAT 1 cut(s) 1109
BspLI GGNNCC 3 cut(s) 151, 222, 387
BspPI GGATC 2 cut(s) 215, 228
BspT104I TTCGAA 3 cut(s) 367, 574, 1079
BspT107I GGYRCC 1 cut(s) 385
BsrI ACTGG 2 cut(s) 387, 477
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 4 cut(s) 220, 804, 996, 1110
BssT1I CCWWGG 1 cut(s) 780
Bst4CI ACNGT 2 cut(s) 164, 1038
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 3 cut(s) 367, 574, 1079
BstDEI CTNAG 3 cut(s) 269, 563, 627
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 237, 345
BstKTI GATC 4 cut(s) 223, 807, 999, 1113
BstMAI GTCTC 2 cut(s) 623, 974
BstMBI GATC 4 cut(s) 220, 804, 996, 1110
BstMCI CGRYCG 2 cut(s) 41, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 220, 996
BstYI RGATCY 2 cut(s) 220, 996
Bsu15I ATCGAT 1 cut(s) 1109
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 1109
BtgI CCRYGG 1 cut(s) 780
BtgZI GCGATG 1 cut(s) 786
BtsCI GGATG 2 cut(s) 237, 345
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 108, 160
CaiI CAGNNNCTG 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 1109
Csp6I GTAC 7 cut(s) 312, 418, 470, 785, 981, 1034, 1069
CviAII CATG 4 cut(s) 636, 671, 781, 869
CviQI GTAC 7 cut(s) 312, 418, 470, 785, 981, 1034, 1069
DdeI CTNAG 3 cut(s) 269, 563, 627
DpnI GATC 4 cut(s) 222, 806, 998, 1112
DpnII GATC 4 cut(s) 220, 804, 996, 1110
Eco130I CCWWGG 1 cut(s) 780
Eco57I CTGAAG 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 141, 1075
EcoT14I CCWWGG 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 4 cut(s) 639, 674, 784, 872
FaqI GGGAC 1 cut(s) 951
FatI CATG 4 cut(s) 635, 670, 780, 868
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 804
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 2 cut(s) 224, 332
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 3 cut(s) 138, 434, 666
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 150
Hin1II CATG 4 cut(s) 639, 674, 784, 872
HincII GTYRAC 2 cut(s) 250, 439
HindII GTYRAC 2 cut(s) 250, 439
HinfI GANTC 5 cut(s) 404, 503, 576, 742, 878
Hpy166II GTNNAC 2 cut(s) 250, 439
Hpy188I TCNGA 5 cut(s) 24, 171, 350, 628, 898
Hpy188III TCNNGA 2 cut(s) 218, 875
Hpy8I GTNNAC 2 cut(s) 250, 439
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 418, 875, 1090
HpyCH4III ACNGT 2 cut(s) 164, 1038
HpyCH4IV ACGT 1 cut(s) 1067
HpyCH4V TGCA 5 cut(s) 75, 132, 521, 943, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 269, 563, 627
HpySE526I ACGT 1 cut(s) 1067
Hsp92II CATG 4 cut(s) 639, 674, 784, 872
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 4 cut(s) 220, 804, 996, 1110
LmnI GCTCC 3 cut(s) 587, 680, 959
LpnPI CCDG 7 cut(s) 102, 110, 203, 368, 452, 458, 1011
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 2 cut(s) 508, 617
MaeI CTAG 3 cut(s) 138, 434, 666
MaeII ACGT 1 cut(s) 1067
MaeIII GTNAC 3 cut(s) 233, 319, 598
MalI GATC 4 cut(s) 222, 806, 998, 1112
MboI GATC 4 cut(s) 220, 804, 996, 1110
MboII GAAGA 3 cut(s) 158, 418, 446
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 2 cut(s) 220, 996
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 8 cut(s) 61, 141, 450, 494, 901, 1008, 1020, 1075
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 823
MnlI CCTC 3 cut(s) 311, 336, 632
MseI TTAA 3 cut(s) 177, 497, 789
MunI CAATTG 1 cut(s) 1008
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 780
NdeII GATC 4 cut(s) 220, 804, 996, 1110
NlaIII CATG 4 cut(s) 639, 674, 784, 872
NlaIV GGNNCC 3 cut(s) 151, 222, 387
NspV TTCGAA 3 cut(s) 367, 574, 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 4 cut(s) 404, 576, 742, 878
PkrI GCNGC 1 cut(s) 298
Ple19I CGATCG 1 cut(s) 1113
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 151, 222, 387
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 2 cut(s) 220, 996
PvuI CGATCG 1 cut(s) 1113
RsaI GTAC 7 cut(s) 313, 419, 471, 786, 982, 1035, 1070
RsaNI GTAC 7 cut(s) 312, 418, 470, 785, 981, 1034, 1069
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 177, 497, 789
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 4 cut(s) 220, 804, 996, 1110
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 512
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 2 cut(s) 508, 617
SfcI CTRYAG 1 cut(s) 7
SfuI TTCGAA 3 cut(s) 367, 574, 1079
Sse9I AATT 8 cut(s) 61, 141, 450, 494, 901, 1008, 1020, 1075
SsiI CCGC 1 cut(s) 431
SspMI CTAG 3 cut(s) 138, 434, 666
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 164, 1038
TaiI ACGT 1 cut(s) 1070
TaqI TCGA 7 cut(s) 367, 438, 574, 876, 1079, 1109, 1113
TaqII GACCGA 1 cut(s) 55
TasI AATT 8 cut(s) 61, 141, 450, 494, 901, 1008, 1020, 1075
TfiI GAWTC 4 cut(s) 404, 576, 742, 878
Tru1I TTAA 3 cut(s) 177, 497, 789
Tru9I TTAA 3 cut(s) 177, 497, 789
TscAI CASTG 2 cut(s) 108, 167
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 132, 321, 857, 1118
TspGWI ACGGA 2 cut(s) 46, 293
TspRI CASTG 2 cut(s) 108, 167
XapI RAATTY 2 cut(s) 141, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 3 cut(s) 138, 434, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.